Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,088,003 – 7,088,123 |
Length | 120 |
Max. P | 0.945409 |
Location | 7,088,003 – 7,088,123 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 78.67 |
Mean single sequence MFE | -31.14 |
Consensus MFE | -22.05 |
Energy contribution | -21.50 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.48 |
Mean z-score | -2.09 |
Structure conservation index | 0.71 |
SVM decision value | 1.35 |
SVM RNA-class probability | 0.945409 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7088003 120 - 27905053 CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAAGUGGCAGAAGUGGCCGGAGUGGGAGAAACGGGGUAAAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUUUAA ((.....(((((..((..((((((((.((.............)).)))))))).)).)))))...........((((.....))))...)).((((((((((.....))..)))))))). ( -33.82) >DroSec_CAF1 21142 111 - 1 CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA---------GUGGCCGAAGUGGGAGAAACGGGGUAAAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA ...(((((((((..((..((((((((.((....---------)).)))))))).))..)))((.(.((.(((.((((.....))))....(((....))).))).)).).)))))))).. ( -35.40) >DroSim_CAF1 23930 111 - 1 CCAAGAAGUUUUAGCAAAGCUUCGGUGGCAGAA---------GUGGCCGAAGUGGGAGAAACGGGGUAAAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA ...(((((((...((...((((((((.((....---------)).))))))))..........((((......((((.....))))....(((....)))..)))).))..))))))).. ( -35.00) >DroEre_CAF1 21712 100 - 1 CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA---------GUGGUCGAAGUGGGAGA---------AAUGGGCCAGGAAAUGGCAAAGGAUUUCAUC--CUUCUAGCAUGGCUUCUAA (((.(((((((.....)))))))..))).((((---------((.(((..((.((((((---------(((..((((.....)))).....))))).))--)).)).).)).)))))).. ( -31.00) >DroYak_CAF1 22645 102 - 1 CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA---------GUGGUAGAAAUGGGAGA---------AAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA ...(((((((...(((..((....)))))....---------(((.((((.........---------.....((((.....))))....(((....)))...)))).)))))))))).. ( -28.70) >DroAna_CAF1 22444 98 - 1 CCAAGAAGUUUUAGCCAAGCAAUGGCCAGAGAA---------AUGGUCAAAAGGGGG-------------CGGCCUGAAAAAUGGGAAAUGGGACGAGUUGCACUUAGUAUGGCUUCUAA ......((....(((((.((..((((((.....---------.)))))).(((...(-------------((((.((....((.....))....)).))))).))).)).))))).)).. ( -22.90) >consensus CCAAGAAGUUUUAGCCAAGCUUCGGUGGCAGAA_________GUGGCCGAAGUGGGAGA_________AAUGGGCCAGGAAAUGGCAAAGGAUGAAAGUCGCAUCUAGCAUGGCUUCUAA ...(((((((...((...((((((((.((.............)).)))))))).(((................((((.....))))....(((....)))...))).))..))))))).. (-22.05 = -21.50 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:44 2006