| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 7,084,744 – 7,084,844 |
| Length | 100 |
| Max. P | 0.615786 |
| Location | 7,084,744 – 7,084,844 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 84.11 |
| Mean single sequence MFE | -35.35 |
| Consensus MFE | -23.56 |
| Energy contribution | -24.87 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7084744 100 + 27905053 AGGCAACCACUUAUGAAGCGAAAGUUGGCA------UGCGCACACACACAUACAGAGGCACAGA-CUCUUAAGGGGGGCAG-U-UAUGUGGGUGUGUGCGUGUGGCGUU ......((((..(((.(((....)))..))------)((((((((((.((((.((..((.(...-(((....))).)))..-)-).)))).)))))))))))))).... ( -37.10) >DroGri_CAF1 22485 94 + 1 AGGCGACCACUUAUGAAGCGAAAGUUGGCAAUGUGA-GCGUCCACACAGCUACAGAGACACACAG--CU-------GCCAAAUA---AUG--UGUGUGUGUGUGGCGUU .((((..(((...((.(((....)))..))..))).-.))))......((((((.(.(((((((.--..-------........---.))--))))).).))))))... ( -34.00) >DroSim_CAF1 20617 100 + 1 AGGCAACCACUUAUGAAGCGAAAGUUGGCA------UGCGCACACACACAUACAGAGGCACAGA-CUCUUAAGGGGGGCAG-U-UAUGUGGGUGUGUGCGUGUGGCGUU ......((((..(((.(((....)))..))------)((((((((((.((((.((..((.(...-(((....))).)))..-)-).)))).)))))))))))))).... ( -37.10) >DroEre_CAF1 18068 100 + 1 AGGCAACCACUUAUGAAGCGAAAGUUGGCA------UGCGCACACACACAUACAGAGGAAUAGA-CUCUUAAGGGGGGCAG-U-UAUGUGGGUGUGUGCGUGUGGCGUU ......((((..(((.(((....)))..))------)((((((((((...((((....(((.(.-((((.....))))).)-)-).)))).)))))))))))))).... ( -34.90) >DroYak_CAF1 19018 100 + 1 AGGCAACCACUUAUGAAGCGAAAGUUGGCA------UGCGCACACACACUUACAGAGGCACAGA-CUCUUAAGGGGGGCAG-U-UAUGUGGGUGUGUGCGUGUGGCGUU ......((((..(((.(((....)))..))------)((((((((((.((((.((((.......-))))))))....(((.-.-..)))..)))))))))))))).... ( -35.90) >DroAna_CAF1 19438 93 + 1 AGGCAACCACUUAUGAAGCGAAAGUUGGCA------UGCGCACACACACAUACA--AGCAUAGA-A-----UGGGGGCCAU-U-UACGUGGGUGUGUGCGUGUGGCGUU .(....).....(((.(((....)))..))------)((((.(((((.((((((--..(((.((-(-----(((...))))-)-)..)))..)))))).))))))))). ( -33.10) >consensus AGGCAACCACUUAUGAAGCGAAAGUUGGCA______UGCGCACACACACAUACAGAGGCACAGA_CUCUUAAGGGGGGCAG_U_UAUGUGGGUGUGUGCGUGUGGCGUU ......((((...((.(((....)))..)).......((((((((((...((((...........(((....)))...........)))).)))))))))))))).... (-23.56 = -24.87 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:43 2006