Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,027,639 – 1,027,755 |
Length | 116 |
Max. P | 0.726441 |
Location | 1,027,639 – 1,027,755 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 80.23 |
Mean single sequence MFE | -22.52 |
Consensus MFE | -14.64 |
Energy contribution | -14.70 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.21 |
Mean z-score | -1.84 |
Structure conservation index | 0.65 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.726441 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1027639 116 - 27905053 AAAGGAGUAUAGUUUUGUAGUCCAAUUUGGGUUAUCAAAUGUUU--UACUUGAAGAUCUUUGUAAUCUUCUGAUUGAAUCAACUGUGUUAUAAUGUAUUCUUAUGGCUCUUCUUUUUU (((((((.((((((...(((((......((((((.((((.((((--(.....))))).))))))))))...)))))....))))))(((((((.......))))))).)))))))... ( -20.90) >DroSec_CAF1 72453 111 - 1 GAAGGAGUAUAGUUUUAUAGUCCAGUUUGAAUUAUCAAAUGUUU--UUUCUGAAGAUUUUUGUAAUCUUUUGAUUGAAUCAA-----CUAUAAUGUGCUCUUAUAUCCCUUCUUUUUU (((((..((((((.(((((((...((((((....))))))((((--..((.(((((((.....))))))).))..))))..)-----))))))...)))...)))..)))))...... ( -25.50) >DroSim_CAF1 76213 114 - 1 GAAGGAGUAUAGUUUUAUAGUCCAGUUUGAAUUAUCAAAUGUUUU-UUUCUGAAGAUUUUUGUAAUCUUUUGAUUGAAUCAACA---CUAUAAUGUGCUCUUAUAUCUCUUGUUUUAU ..(((((((((...(((((((...((((((....))))))(.(((-..((.(((((((.....))))))).))..))).)...)---)))))))))))))))................ ( -23.80) >DroEre_CAF1 75893 107 - 1 GACGGAGAAUAGUUUUAUACCCCAAUUUGGGUUAUCAAAUGUUUUUUUUCUGAAGAUCUUUGUAAUCUU-UGAUUGAGUCAA-----CUAGCAUGUGUUCUCUUAUAGUUUAU----- ...((((((((...........(((((.((((((.((((.((((((.....)))))).)))))))))).-.))))).((...-----...))...))))))))..........----- ( -19.90) >consensus GAAGGAGUAUAGUUUUAUAGUCCAAUUUGAAUUAUCAAAUGUUU__UUUCUGAAGAUCUUUGUAAUCUUUUGAUUGAAUCAA_____CUAUAAUGUGCUCUUAUAUCUCUUCUUUUUU ..(((((((((((((.(((((((.....))))))).))))..............(((.....(((((....))))).))).............)))))))))................ (-14.64 = -14.70 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:57 2006