Locus 2619

Sequence ID 3R_DroMel_CAF1
Location 7,075,857 – 7,075,960
Length 103
Max. P 0.980326
window4263

overview

Window 3

Location 7,075,857 – 7,075,960
Length 103
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 92.45
Mean single sequence MFE -26.40
Consensus MFE -23.49
Energy contribution -24.05
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.45
Structure conservation index 0.89
SVM decision value 1.86
SVM RNA-class probability 0.980326
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7075857 103 + 27905053
CAGAUUC------AGAUUCAGUUUCAGUUUCGGUUUCAGUUUUUGUUCUUGUGGAUUUGGAAUUUUCACGAGAGCUGGGAAUUGUUUUGUUUCGCUGUGAUUUAUCUGC
......(------((((..((((.((((..(((...(((((((((((((((((((.........))))))))))).))))))))..)))....)))).)))).))))). ( -28.20)
>DroSec_CAF1 8723 109 + 1
CAGAUUCAGAUUCAGAUUCAGUUUCAGUUUCGGUUUCAGUUUUUGUUCUUGUGGAUUUGGAAUUUUCACGAGAGCUGGGAAUUGUUUUGUUUCGCUGUGAUUUAUCUGC
............(((((..((((.((((..(((...(((((((((((((((((((.........))))))))))).))))))))..)))....)))).)))).))))). ( -28.20)
>DroSim_CAF1 11439 103 + 1
CAGAUUC------AGAUUCAGUUUCAGUUUCGGUUUCAGUUUUUGUUCUUGUAGAUUUGGAAUUUUCACGAGAGCUGGGAAUUGUUUUGUUUCGCUGUGAUUUAUCUGC
......(------((((..((((.((((..(((...((((((((((((((((.((..........)))))))))).))))))))..)))....)))).)))).))))). ( -23.90)
>DroYak_CAF1 9411 97 + 1
------C------AGAUUCAGUUUCAGAUUCAGUUUCAGUUUUUGUUCUUGUGGAUUUGGAAUUUUCACGAGAGCUGGCAAUUGUUUUGUUUCGCUGUGAUUUAUCUGC
------(------((((..((((.(((...(((...((((((..(((((((((((.........)))))))))))..).)))))..))).....))).)))).))))). ( -25.30)
>consensus
CAGAUUC______AGAUUCAGUUUCAGUUUCGGUUUCAGUUUUUGUUCUUGUGGAUUUGGAAUUUUCACGAGAGCUGGGAAUUGUUUUGUUUCGCUGUGAUUUAUCUGC
.............((((..((((.((((..(((...(((((((((((((((((((.........))))))))))).))))))))..)))....)))).)))).)))).. (-23.49 = -24.05 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:40 2006