Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,073,312 – 7,073,407 |
Length | 95 |
Max. P | 0.710643 |
Location | 7,073,312 – 7,073,407 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -18.23 |
Consensus MFE | -18.00 |
Energy contribution | -18.67 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -1.59 |
Structure conservation index | 0.99 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.710643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7073312 95 + 27905053 UCCUCACUUAAUAAUAGCACAGUUAAGUAAAAGACAGUUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU .......(((((((((((...)))).(((.(((.((((((((.(((.........))).)))))))).))).)))....)))))))......... ( -13.10) >DroSec_CAF1 6229 95 + 1 CUCUUACUUAAUAAUAGCAAAGUUAAGUAAAAGACAGGUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU ...............(((((((...(((((((.((((((((..((((((((....))))))))..))))))))....)))))))...))))))). ( -20.80) >DroSim_CAF1 8845 95 + 1 CUCUUACUUAAUAAUAGCAAAGUUAAGUAAAAGACAGGUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU ...............(((((((...(((((((.((((((((..((((((((....))))))))..))))))))....)))))))...))))))). ( -20.80) >consensus CUCUUACUUAAUAAUAGCAAAGUUAAGUAAAAGACAGGUUGUAUUGUUUUGUUAUUAGAGCAAAUUGGCUUGUACAAUUUUAUUGAUUUUUGUUU ...............(((((((...(((((((.((((((((..((((((((....))))))))..))))))))....)))))))...))))))). (-18.00 = -18.67 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:35 2006