Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,070,981 – 7,071,074 |
Length | 93 |
Max. P | 0.962184 |
Location | 7,070,981 – 7,071,074 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 74.82 |
Mean single sequence MFE | -39.43 |
Consensus MFE | -24.17 |
Energy contribution | -25.48 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.28 |
Mean z-score | -1.98 |
Structure conservation index | 0.61 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962184 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7070981 93 + 27905053 AAGCCCGGCCAGGCUCUGUUCAAGAUCAAGCCCGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU---CCUGCGCCUGCUGCCCCAAAA ..(((.(((..((.(((.....)))))..))).)))((((((..(((...(((((((((....)))))))))---...)))..))))))....... ( -41.60) >DroPse_CAF1 7873 96 + 1 AAGCCUGGCCAGGAGCUGUUCAAGAUGAAGCCGGGUGCGGCUCCUGCUAAGGCGGCGGGUGCAGCCGCACCAGCUCCCGCUCCAGCUGCCCCCAAG .(((.(((.(.((((((.(((.....)))....(((((((((((((((.....))))))...))))))))))))))).)..))))))......... ( -43.50) >DroGri_CAF1 4655 84 + 1 AAGCCCGGCCAAGAGCUCUUCAAAAUGAAGCCUGGCGCCGCUCCAGCCAAGUCAGCUAGUGCGCCGGCC------------GCAGAAGCGCCUAAG ..((..((((.((.((((........).)))))(((((.(((..(((.......)))))))))))))))------------((....))))..... ( -27.40) >DroSec_CAF1 3880 93 + 1 AAGCCCGGCCAGGCUCUGUUCAAGAUUAAGCCUGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU---CCUGCGCCUGCUGCCCCAAAA .......((((((((..(((...)))..))))))))((((((..(((...(((((((((....)))))))))---...)))..))))))....... ( -45.20) >DroSim_CAF1 6430 93 + 1 AAGCCCGGCCAGGCUCUGUUCAAGAUUAAGCCCGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU---CCUGCGCCUGCUGCCCCAAAA .......(((.((((..(((...)))..)))).)))((((((..(((...(((((((((....)))))))))---...)))..))))))....... ( -40.60) >DroAna_CAF1 3314 91 + 1 AAGCCCGGCCAGGAACUUUUUAAGAUGAAGCCUGGUGCGGCGCCGGCCGGAGCACCAGCUCCAGCAGCUGCUGCCCCAGCGCCCGCUGCCC----- ..(((((((((((..((((.......)))))))))).))).)).(((.(((((....)))))(((.((.((((...))))))..)))))).----- ( -38.30) >consensus AAGCCCGGCCAGGAUCUGUUCAAGAUGAAGCCUGGUGCAGCGCCCGCCAAGGCAGCUGCUCCAGCGGCUGCU___CCUGCGCCUGCUGCCCCAAAA ..(((.(((......((.....)).....))).)))((((((...((...(((((((((....)))))))))......))...))))))....... (-24.17 = -25.48 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:34 2006