Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,058,603 – 7,058,702 |
Length | 99 |
Max. P | 0.506104 |
Location | 7,058,603 – 7,058,702 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 81.49 |
Mean single sequence MFE | -18.74 |
Consensus MFE | -12.27 |
Energy contribution | -12.67 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.65 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.506104 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7058603 99 - 27905053 AGCACGCUCUCUAAAAGAAAA-AGGAAAAGAUCGGUGGCAGAGAUGAUUCAGUAUGCGAUGCAGUGGACAGAAACACUGCAUGGCGAACCAUAACAAUAU .((.((((.(((.........-......)))..))))))............((.(((.((((((((........)))))))).))).))........... ( -24.66) >DroSec_CAF1 2097 94 - 1 AGCACGCUCUCUAAAAGAAAAAA-----AGAUCGGUGGCAGAGAUGAU-CAGUAUCCGAUGCAGUGGACAGACACACUGCAUGACGAACCAUAACAAUAU ....((.((..............-----..(((((..((.((.....)-).))..)))))((((((........))))))..)))).............. ( -19.00) >DroSim_CAF1 2104 99 - 1 AGCACGCUCUCUAAAAGAAAAAAAGAAAAGAUCGGUGGCAGAGAUGAU-CAGUAUCCGAUGCAGUGGACAGACACACUGCAUGACGAACCAUAACAAUAU ....((.((.....................(((((..((.((.....)-).))..)))))((((((........))))))..)))).............. ( -19.00) >DroEre_CAF1 2140 83 - 1 AGCACGCUCUCUAA----AAG-------AAAUCGGAUACAGAGAAAAUUCAAUAUCCAAUGCAGUG----G--ACACUGCAUGACGAAACAUAACAAUAU ....((.((.....----...-------.....(((((..(((....)))..))))).(((((((.----.--..))))))))))).............. ( -16.00) >DroYak_CAF1 2091 91 - 1 AGCACGCUCUCUAAAAAAAAG-------AAAUCGGAUGCAGAAAAAAUUCAAUAUGCAAUGCAGUGCAUUG--ACACUGCACGACGAACCAUAACAAUAU .....................-------...(((..((((..............)))).(((((((.....--.)))))))...)))............. ( -15.04) >consensus AGCACGCUCUCUAAAAGAAAA_A_____AGAUCGGUGGCAGAGAUGAUUCAGUAUCCGAUGCAGUGGACAGA_ACACUGCAUGACGAACCAUAACAAUAU ....((((((((...........................)))))..............((((((((........))))))))).)).............. (-12.27 = -12.67 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:29 2006