Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,026,053 – 1,026,150 |
Length | 97 |
Max. P | 0.615123 |
Location | 1,026,053 – 1,026,150 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 70.87 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -11.44 |
Energy contribution | -11.12 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.24 |
Mean z-score | -1.73 |
Structure conservation index | 0.42 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615123 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1026053 97 - 27905053 -ACUCACAACUCAGCCCAACCCUAAUUGCUUAUGAUGAUGACAUUGGCAGGGA-U---CCUUUUCGGGAGUCCCUGUUGCUU-GGCGUUGGUUUUGGGAUGCG -.((((.(((.((((((((..............((((....))))((((((((-(---(((....)))).))))))))..))-)).))))))).))))..... ( -31.30) >DroSec_CAF1 70923 77 - 1 -ACUCACAUCCCAGCCCAACCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGA-U---CCUUUUCGGGAGUCCCUGUUGCUU--------------------- -..(((((((..(((............)))...)))).)))....((((((((-(---(((....)))).))))))))....--------------------- ( -21.50) >DroSim_CAF1 74680 77 - 1 -ACUCACAUCCCAGCCCAACCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGA-U---CCUUUUCGGGAGUCCCUGUUGCUU--------------------- -..(((((((..(((............)))...)))).)))....((((((((-(---(((....)))).))))))))....--------------------- ( -21.50) >DroEre_CAF1 73687 98 - 1 -AAUACGAGUAUAUCCCAUCCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGGUU---CCUUUUCGGGAGUUCCUGUUGCUU-GGCGUUAGUUUUGGGAUGCA -..........(((((((...((((.((((...((((....))))((((((..((---(((....)))))..))))))....-))))))))...))))))).. ( -34.60) >DroAna_CAF1 71193 99 - 1 GAGUCGUCCCUCAUGUCAACUCGAACCGCUCGUAAUAAUGACAUUGGCAGCGG-UUUCCUUUUUUGGGUGUCCCUGUUGCUUUGGAGUUG---UUUGGAUGCG ..(.(((((.......((((((.......((((....))))((..((((((((-...(((.....))).....)))))))).))))))))---...)))))). ( -26.60) >consensus _ACUCACAUCCCAGCCCAACCCUAAUCGCUUAUGAUGAUGACAUUGGCAGGGA_U___CCUUUUCGGGAGUCCCUGUUGCUU_GG_GUU____UU_GGAUGC_ ...........................((....((((....))))((((((((.....(((....)))..))))))))))....................... (-11.44 = -11.12 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:56 2006