Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,049,556 – 7,049,669 |
Length | 113 |
Max. P | 0.574839 |
Location | 7,049,556 – 7,049,669 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 76.75 |
Mean single sequence MFE | -32.87 |
Consensus MFE | -25.25 |
Energy contribution | -24.17 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.29 |
Mean z-score | -0.80 |
Structure conservation index | 0.77 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.574839 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7049556 113 + 27905053 ACUUUUUCUCU--AUUUGC-----CUGUAGAUCCGCUUGAUCAAGCAGCGCCAAAAGAAGGCCCAUGUCAUGGAGAUCCAGCUGAACGGCGGCUCCAUCGAGGACAAGGUCAAGUGGGCU ........(((--((....-----..)))))(((((((((((.....(.(((.......))).).((((((((((..((.(((....)))))))))))....)))).))))))))))).. ( -37.60) >DroVir_CAF1 3106 109 + 1 A-----UUUACU-CUUGUC-----GUACAGAUUCGUUUGAUCAAUCAGCGCCAGAAGAAGGCGCACAUCAUGGAGAUCCAGCUGAAUGGUGGCUCCAUUGAGGAUAAGGUUAAAUGGGUG .-----......-......-----......((((((((((((.(((.(((((.......)))))...((((((((..(((......)))...))))).))).)))..)))))))))))). ( -34.10) >DroGri_CAF1 3255 115 + 1 AAACCGUUUGUUUUUGGCA-----UUUUAGAUCCGUCUGAUCAAGCAACGCCAAAAGAAGGCGCAUAUCAUGGAGAUCCAGCUGAACGGUGGCUCCGUCGAGGAUAAGGUCAAAUGGGUG ...((((((.((((((((.-----((((.((((.....)))).)).)).))))))))..(((.(.((((((((((..(((.(.....).)))))))))....)))).))))))))))... ( -31.10) >DroWil_CAF1 3152 115 + 1 --CCUUAUUGA---UUUUCCCUUAUUCCAGAUCCGCUUGAUUAAGCAGCGCCAAAAGAAGGCCCACAUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUUGAAGAUAAGGUCAAGUGGGUG --.........---................((((((((((((...(((((((.......)))........(((....)))))))..(((((....))))).......)))))))))))). ( -32.40) >DroMoj_CAF1 3110 110 + 1 A-----CUUAUUUUUUGAU-----UUUCAGAUCCGCCUGAUUAAGCAACGUCAAAAGAAGGCCCACAUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUUGAGGAUAAGGUCAAGUGGGUG .-----....(((((((((-----..((((......)))).........)))))))))..((((((.((((((((..(((.(.....).)))))))).))).(((...)))..)))))). ( -29.80) >DroAna_CAF1 3641 110 + 1 --------CCU--GUUCGCCCUUUUUGUAGAUUCGUCUGAUCAAGCAGCGCCAAAAGAAGGCUCAUGUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUCGAGGACAAGGUCAACUGGGCC --------...--....((((.....((.((((.((((.......(((((((.......)))........(((....)))))))..(((((....))))).))))..)))).)).)))). ( -32.20) >consensus A_____UUUAU__UUUGGC_____UUGCAGAUCCGCCUGAUCAAGCAGCGCCAAAAGAAGGCCCACAUCAUGGAGAUCCAGCUGAACGGUGGCUCCAUCGAGGAUAAGGUCAAGUGGGUG ..............................((((((.(((((.......(((.......)))...(.((((((((..((.(((....))))))))))).)).)....))))).)))))). (-25.25 = -24.17 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:23 2006