Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,047,491 – 7,047,595 |
Length | 104 |
Max. P | 0.689995 |
Location | 7,047,491 – 7,047,595 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 77.11 |
Mean single sequence MFE | -20.59 |
Consensus MFE | -6.66 |
Energy contribution | -8.86 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.14 |
Mean z-score | -1.91 |
Structure conservation index | 0.32 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.689995 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7047491 104 + 27905053 AGUGUUACCGUACUGCGAAAAGUGACCUUAAACC-----CAUCUC-AAAAAAUAUACCAAACGUGUAUUUCUCAGCAAAGUUACCACUGGGCACACUACACACUAUAUAA (((((...((.....))...((((..........-----......-...((((((((.....))))))))....((..(((....)))..)).))))..)))))...... ( -16.50) >DroSec_CAF1 1385 105 + 1 AGUGUGACCGUACUGUCAAGAGUGACUAUAAACC-----CACCUCGAAAAAAUAAACUAGAAGUGUAUUUCUCAGCAAAGUCACAACUGGUCACAUUACACACUAUAUAA (((((((((...((....)).((((((..(((..-----(((.((..............)).)))..)))........))))))....)))))))))............. ( -21.24) >DroSim_CAF1 1326 105 + 1 AGUGUGACCGUACUGUCAAGAGUGACCAUAAACC-----CACCUCGAAAAAAUAUACUAGAAGUGUAUUUCUCAGCAAAGUCACAACUGGUCACAUUACACACUAUAUAA ((((((......((....)).((((((.......-----......((..((((((((.....)))))))).)).....(((....)))))))))....))))))...... ( -23.50) >DroEre_CAF1 1334 107 + 1 AGUGUGACCAUGCUGCCAAGAGUGACCUUAAAAUUAUACCACCAC--AAAAAUAUACCAAAGGGGUAUUUUUCGGCAAGGU-AUAACUGGGCACAUUGUAGUCUAUAUAA .(((((((.(((.((((...(((.(((((..((..(((((.((..--..............)))))))..))....)))))-...))).)))))))....))).)))).. ( -23.09) >DroYak_CAF1 1505 94 + 1 --------GAUGCUGCCAAAAGUGACCUUAAACU-----CACCAC--U-AAAUAUACCAGAGUGGUAAUUUUCAGAAAAGUCAUAACUGGGCACAUUGUAGUCUAUAUAA --------((((.((((....(((((((.(((.(-----.(((((--(-...........)))))).).))).))....))))).....))))))))............. ( -18.60) >consensus AGUGUGACCGUACUGCCAAGAGUGACCUUAAACC_____CACCUC_AAAAAAUAUACCAGAAGUGUAUUUCUCAGCAAAGUCACAACUGGGCACAUUACACACUAUAUAA ((((((.(((((((......)))).........................((((((((.....)))))))).................))).))))))............. ( -6.66 = -8.86 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:20 2006