Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,041,830 – 7,041,935 |
Length | 105 |
Max. P | 0.698265 |
Location | 7,041,830 – 7,041,935 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 83.66 |
Mean single sequence MFE | -34.03 |
Consensus MFE | -23.63 |
Energy contribution | -23.55 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.38 |
Mean z-score | -2.45 |
Structure conservation index | 0.69 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.698265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7041830 105 - 27905053 UGUGAAAGUGGCCCGCAAAUGGAGGCAAAAUAUGAGUGAAGUGCCGCCCCAGGGCUGGGCCAUGAAAACAACACCCAGC--UCAAGUGGGAAAAUGUGAAAAUGCGG (((....(((((((((...(((.((((..((....))....))))...)))..)).)))))))....)))...((((.(--....)))))................. ( -32.60) >DroPse_CAF1 5714 105 - 1 UGUGAAAACGGCGGACAAUUGAAAGAAAAUCAUGAAUGAAGUGUUGCCCAAGUGCUGUGCCAUGAAAUU-CUGCCUACCAAUG-GGCUGGAAAACGUGAAAAAAUGA .((....))((((((...((....))...(((((.....((..((.....))..))....)))))...)-)))))..(((...-...)))....(((......))). ( -20.30) >DroSec_CAF1 5763 105 - 1 UGUGAAAGUGGCCCGCAAAUGGAGGCAAAACAUGAGUGAAGUGCCGCCACAGGGCUGGGCCAUGAAAACAACACCCAGC--GCAAGUGGGAAAAUGUGAAAAUGCGG (((....(((((((((...(((.((((..((....))....)))).)))....)).)))))))....)))...((((.(--....)))))................. ( -38.10) >DroSim_CAF1 5759 105 - 1 UGUGAAAGUGGCCCGCAAAUGGAGGCAAAACAUGAGUGAAGUGCCGCCCCAGGGCUGGGCCAUGAAAACAACACCCAGC--GCAAGUGGGAAAAUGUGAAAAUGCGG (((....(((((((((...(((.((((..((....))....))))...)))..)).)))))))....)))...((((.(--....)))))................. ( -37.90) >DroEre_CAF1 5845 105 - 1 UGUGAAAGUGGCCCGCUAAUGGAGGCAAAACUUGACUGAAGUGCCGCCCCAGGGCUGGGCCAAAAAAACACCACCCAUC--GCAAGGGGGAAAAUGUGAAAAUCCGG (((.....(((((((((..(((.(((...((((.....))))...)))))).))).)))))).....)))...(((.((--....)))))................. ( -36.80) >DroYak_CAF1 5750 105 - 1 UGUGAAAGUGGCCCGCAAAUGGAGGCAAACCAUGACUGAAGUGCCGCCUCAGGGCUGGGCCAUGAAAACACCACCCACC--GCAAGGGGGAAAUUGUGAAAAUCCGG (((....(((((((((....((.((((...((....))...)))).)).....)).)))))))....)))...(((.((--....)))))................. ( -38.50) >consensus UGUGAAAGUGGCCCGCAAAUGGAGGCAAAACAUGAGUGAAGUGCCGCCCCAGGGCUGGGCCAUGAAAACAACACCCAGC__GCAAGUGGGAAAAUGUGAAAAUGCGG (((....((((((((........((((...(......)...))))(((....)))))))))))....)))...(((.((......)))))................. (-23.63 = -23.55 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:15 2006