Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,041,368 – 7,041,463 |
Length | 95 |
Max. P | 0.739096 |
Location | 7,041,368 – 7,041,463 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 79.83 |
Mean single sequence MFE | -27.40 |
Consensus MFE | -20.62 |
Energy contribution | -21.07 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.16 |
Mean z-score | -1.36 |
Structure conservation index | 0.75 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.739096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7041368 95 - 27905053 AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU-UACGCUUCCUACCUUUUCGUUAG--CAUA--AAUCCUAA ....((((((....))))..((((((((.....)))).))))(((((((...(((.....-.))).......)))))))....)--)...--........ ( -28.20) >DroGri_CAF1 5839 94 - 1 AUCCGUGGCUCUCUGGCCAAGCGUGCCCUGAUUGAGCUGCGCGAAAAGGGUAAAUAUUCCAAACUUUUAACAGAAUUUCA------AACAAUGUUUGUAA .((((..((((((.((((....).)))..))..))))..)).))...(((.......)))..................((------(((...)))))... ( -20.10) >DroSec_CAF1 5301 95 - 1 AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU-UACGCUUCCUAGCACUUCGUUAG--CACA--AAUCCUAA .(((((((((....))))..(((.((((.....)))))))))).))(((((.(((.....-.)))....(((((.....)))))--....--.))))).. ( -28.30) >DroSim_CAF1 5298 95 - 1 AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU-UACGCUUCCUAGCACUUCGUUAG--CACA--AAUCCUAA .(((((((((....))))..(((.((((.....)))))))))).))(((((.(((.....-.)))....(((((.....)))))--....--.))))).. ( -28.30) >DroEre_CAF1 5389 90 - 1 AUCCGCGGCUCCCUUGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUGCU-GGC-------UGCACUUCAUCACUUAACA--AAUCCUAA ....((((((.....((.(((((((((((..(((.......)))..))))))))))))).-)))-------)))................--........ ( -29.00) >DroYak_CAF1 5293 88 - 1 AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUGCU-GGC-------UGCACUUCACCAC--AACA--AAUCCUAA ....((((((....(((.(((((((((((..(((.......)))..))))))))))))))-)))-------)))..........--....--........ ( -30.50) >consensus AUCCGCGGCUCCCUGGCCAAGCGUGCUCUCAUCGAGCUGCGCGAGAAGGGUACGUUUCCU_UACGCUUCCUAGCACUUCAUUAG__AACA__AAUCCUAA ....(((((......)))(((((((((((..(((.......)))..)))))))))))...............)).......................... (-20.62 = -21.07 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:14 2006