Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,034,067 – 7,034,169 |
Length | 102 |
Max. P | 0.842845 |
Location | 7,034,067 – 7,034,169 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 82.88 |
Mean single sequence MFE | -29.89 |
Consensus MFE | -23.02 |
Energy contribution | -22.47 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.27 |
Mean z-score | -2.31 |
Structure conservation index | 0.77 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.842845 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7034067 102 + 27905053 UUUGAGCUACUGCCUCCGACGGAAAACGGAAAGGAAAGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAUCC .....(((.((((((((..((.....)).........((....((....))....))...............((....))))).)))))..)))........ ( -26.00) >DroSec_CAF1 33600 102 + 1 UUUGAGCUGCUGCCUCCGACGGAAAACGGAAAGGAAGGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAGCC .....((((((((((((..((.....))....)).)))))))))).......((..(.(((.((........((....)).........))..))).)..)) ( -34.53) >DroSim_CAF1 48312 102 + 1 UUCGAGCUGCUGCCUCCGACGGAAAACGGAAAGGAAGGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAGCC (((..((((((((((((..((.....))....)).)))))))))).)))...((..(.(((.((........((....)).........))..))).)..)) ( -35.43) >DroEre_CAF1 31802 102 + 1 UUUGAGUUGCUGCCUCCGACGGAAAACGGAAAGGAAAGCGGAAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAAAAAACGUGGAGGGCAGCAAGCAUGGAUCC ..((..((((((((..(.(((................((....((....))....))..(.((....)).)......))).)..)))))))).))....... ( -28.80) >DroYak_CAF1 33694 102 + 1 UUUGAGCUGUUGCCUCCGACGGAAAACGGAAAGGAAAGCGGAAGCGGAAGUGGGAGCGAUGCUGAAAACGAAACGGAAGUGGAGGGCAGCAAGCAUGGAUCC .....(((.(..(.(((..((.....)).........((....))))).)..).)))..(((((....(...((....))...)..)))))........... ( -30.40) >DroAna_CAF1 36525 90 + 1 UUCGAAUUGCUGCCAUCCGCAGAAAAUGGAGGGAAGAGCGACA------------GCGACGGCGAAAGGAUAUCAGAAACGGAAGGCAGCAAACAUGGAUCU ......((((((((.((((..................((....------------)).....(....)...........)))).)))))))).......... ( -24.20) >consensus UUUGAGCUGCUGCCUCCGACGGAAAACGGAAAGGAAAGCGGCAGCGGAAGUGGGAGCGAUGGUGAAAAUGAAACGGAAGUGGAGGGCAGCAAGCAUGGAUCC ((((.((((((((((((..((.....)).........((....((....))....)).......................))).)))))).))).))))... (-23.02 = -22.47 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:13 2006