Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,033,051 – 7,033,143 |
Length | 92 |
Max. P | 0.744430 |
Location | 7,033,051 – 7,033,143 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 76.57 |
Mean single sequence MFE | -26.43 |
Consensus MFE | -18.84 |
Energy contribution | -18.98 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.27 |
Mean z-score | -1.15 |
Structure conservation index | 0.71 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744430 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7033051 92 + 27905053 UUUAACUUGAUUUCUUCAUCUGAAA--CCCAGCUCUCGGGCAGCACAACGAUGGAUUUGUGCGCUGUCCCGAGGAGGCUCUCACCUGGGAGCAC .....((.(.((((.......))))--.).))((((((((((((.((.(((.....))))).)))).))))).)))((((((....)))))).. ( -32.50) >DroGri_CAF1 40295 85 + 1 ---------AUAUUCUCUUCUGUCUCUUGUAGCUCUCGGCCAGCACAACGAUGGCUUUGUGCGUUGCCCCGACGAGGCUUUGACUUGGGAGCAU ---------.....(((((..(((......(((.((((((..((((((........))))))...))).....))))))..)))..)))))... ( -24.00) >DroSec_CAF1 32586 92 + 1 UUUAACUCGAUUUCUUCAUCUGAAA--CCCAGCUCUCGGUCAGCACAACGAUGGAUUUGUGCGCUGUCCUGAGGAGGCUCUCACCUGGGAGCAC .....(((..((((.......))))--.......(((((.((((.((.(((.....))))).)))).)).))))))((((((....)))))).. ( -28.60) >DroEre_CAF1 30790 92 + 1 UUCAACCCGGUUUCUCCAUCGGAAA--UCCAGCUCUCGGCCAGCACAACGAUGGAUUUGUGCGCUGCCCCGACGAGGCUCUCACCUGGGACCAC .....((((((((((.....)))))--)).(((((((((.((((.((.(((.....))))).))))..)))).)).))).......)))..... ( -26.80) >DroWil_CAF1 58198 86 + 1 UUUUAUUUGGUUUUUC-UUU-------UCUAGCUCUUGGCCAGCAUAAUGAUGGCUUUGUACGUUGUCCCGAGGAAGCCUUAACCUGGCAACAU ................-...-------...........(((((.....(((.((((((.(.((......))).)))))))))..)))))..... ( -16.80) >DroYak_CAF1 32686 89 + 1 ---AACUCGAUUUCUUCAUUUGAAA--CCUAGCUCUCGGCCAGCACAACGAUGGCUUUGUGCGCUGUCCCGAGGAGGCUCUCACCUGGGAGCAC ---..((((.((((.......))))--.).....(((((.((((.((.(((.....))))).))))..))))))))((((((....)))))).. ( -29.90) >consensus UUUAACUCGAUUUCUUCAUCUGAAA__CCCAGCUCUCGGCCAGCACAACGAUGGAUUUGUGCGCUGUCCCGAGGAGGCUCUCACCUGGGAGCAC ................................(((((((.((((.((.(((.....))))).))))..)))).)))((((((....)))))).. (-18.84 = -18.98 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:12 2006