Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,020,714 – 1,020,926 |
Length | 212 |
Max. P | 0.968558 |
Location | 1,020,714 – 1,020,809 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 74.00 |
Mean single sequence MFE | -28.65 |
Consensus MFE | -22.62 |
Energy contribution | -22.32 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.26 |
Mean z-score | -1.30 |
Structure conservation index | 0.79 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949268 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1020714 95 + 27905053 ----------AGUUCUACAUGCAUUCAAGAGGCGGCUCCCUGUAAAGUAAAGGAGCC-U-GGUCCAAAAAUUCCGAACUCCAAUCGCG-AACGAUCGGCGAGCGGGGG----- ----------.(..(((...((.........))((((((.(........).))))))-)-))..).....(((((..(.((.((((..-..)))).)).)..))))).----- ( -23.80) >DroGri_CAF1 80317 104 + 1 --------UUAGUUUUCAAUGUAUACAAUAGACGACCCCCUAUAAAGUAAGGGGGCC-UUUUUCCAAAAAUUCCGAAAGCUAAUCACGAGAUGAUCAGCAAACGGGGGCUGAU --------(((((((((..((....))......(.((((((........)))))).)-................)))))))))..........((((((........)))))) ( -26.20) >DroEre_CAF1 68394 96 + 1 ---------UAGUUUUAUAUGCAUUUAAGAGGCGGCGCCCUGUAAAGUAAGGGCGCC-U-GGUCCAAAAAUUCCGAACUCCAAUCGCG-AACGAUCGGCGAGCGGGGG----- ---------..(((((.((......)).)))))((((((((........))))))))-.-..........(((((..(.((.((((..-..)))).)).)..))))).----- ( -32.40) >DroYak_CAF1 70171 105 + 1 UUCAACAUCUAGUUUUAUAUGCAUUAAAGAGGCGGCUCCCUGUAAAGUAAGGAAGCC-U-AGUCCAAAAAUUCCGAACUCCAAUCGCG-AACGAUCGACGAGCGGGGG----- (((........(((((............)))))((((.(((........))).))))-.-..............)))((((..(((((-(....))).)))..)))).----- ( -23.20) >DroMoj_CAF1 65459 98 + 1 --------GUGAAUGUAAAUGUAUUAUAUAGACGACUCCCUAUGAAGUAAGGGAGUC-U-UUUCCAAAAAUUCCGAACGCUAAUCGCA-G-AGAUCAGCGAGCGGGGGUU--- --------((..((((((.....))))))..))((((((((........))))))))-.-..........(((((..((((.(((...-.-.))).))))..)))))...--- ( -30.90) >DroAna_CAF1 65709 100 + 1 UU------AUAAUAUCAAAUGUAUUUAUGAGACGGCCCCCUGUUAAGUAAGGGGGCCUU-GGUCCAAAAAUUCCGAACCCUGAUCGCA-GGCGACCAGUGAGCGGGGG----- ..------..............((((.((.(((((((((((........))))))))..-.))))).))))......(((((.((((.-((...)).)))).))))).----- ( -35.40) >consensus _________UAGUUUUAAAUGCAUUAAAGAGACGGCUCCCUGUAAAGUAAGGGAGCC_U_GGUCCAAAAAUUCCGAACUCCAAUCGCG_AACGAUCAGCGAGCGGGGG_____ ..............................(((((((((((........))))))))....)))......(((((..(.((.((((.....)))).)).)..)))))...... (-22.62 = -22.32 + -0.30)
Location | 1,020,714 – 1,020,809 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.00 |
Mean single sequence MFE | -33.48 |
Consensus MFE | -30.03 |
Energy contribution | -27.98 |
Covariance contribution | -2.05 |
Combinations/Pair | 1.58 |
Mean z-score | -3.27 |
Structure conservation index | 0.90 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1020714 95 - 27905053 -----CCCCCGCUCGCCGAUCGUU-CGCGAUUGGAGUUCGGAAUUUUUGGACC-A-GGCUCCUUUACUUUACAGGGAGCCGCCUCUUGAAUGCAUGUAGAACU---------- -----...(((..(.(((((((..-..))))))).)..))).((((..(((..-.-((((((((........))))))))...))).))))............---------- ( -31.10) >DroGri_CAF1 80317 104 - 1 AUCAGCCCCCGUUUGCUGAUCAUCUCGUGAUUAGCUUUCGGAAUUUUUGGAAAAA-GGCCCCCUUACUUUAUAGGGGGUCGUCUAUUGUAUACAUUGAAAACUAA-------- .((((...(((...(((((((((...)))))))))...)))......((((....-((((((((........)))))))).)))).........)))).......-------- ( -35.00) >DroEre_CAF1 68394 96 - 1 -----CCCCCGCUCGCCGAUCGUU-CGCGAUUGGAGUUCGGAAUUUUUGGACC-A-GGCGCCCUUACUUUACAGGGCGCCGCCUCUUAAAUGCAUAUAAAACUA--------- -----...(((..(.(((((((..-..))))))).)..))).((((..(((..-.-((((((((........))))))))...))).)))).............--------- ( -34.70) >DroYak_CAF1 70171 105 - 1 -----CCCCCGCUCGUCGAUCGUU-CGCGAUUGGAGUUCGGAAUUUUUGGACU-A-GGCUUCCUUACUUUACAGGGAGCCGCCUCUUUAAUGCAUAUAAAACUAGAUGUUGAA -----...(((..(..((((((..-..))))))..)..)))(((.(((((...-.-((((((((........))))))))((.........))........))))).)))... ( -29.70) >DroMoj_CAF1 65459 98 - 1 ---AACCCCCGCUCGCUGAUCU-C-UGCGAUUAGCGUUCGGAAUUUUUGGAAA-A-GACUCCCUUACUUCAUAGGGAGUCGUCUAUAUAAUACAUUUACAUUCAC-------- ---.....(((..((((((((.-.-...))))))))..)))......((((..-.-((((((((........)))))))).))))....................-------- ( -33.90) >DroAna_CAF1 65709 100 - 1 -----CCCCCGCUCACUGGUCGCC-UGCGAUCAGGGUUCGGAAUUUUUGGACC-AAGGCCCCCUUACUUAACAGGGGGCCGUCUCAUAAAUACAUUUGAUAUUAU------AA -----...(((..(.(((((((..-..))))))).)..))).((((.(((((.-..((((((((........))))))))))).)).))))..............------.. ( -36.50) >consensus _____CCCCCGCUCGCCGAUCGUC_CGCGAUUAGAGUUCGGAAUUUUUGGACC_A_GGCUCCCUUACUUUACAGGGAGCCGCCUCUUAAAUACAUUUAAAACUA_________ ........(((..(.(((((((.....))))))).)..)))...............((((((((........))))))))................................. (-30.03 = -27.98 + -2.05)
Location | 1,020,744 – 1,020,847 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 76.11 |
Mean single sequence MFE | -30.85 |
Consensus MFE | -17.17 |
Energy contribution | -16.98 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.35 |
Mean z-score | -1.97 |
Structure conservation index | 0.56 |
SVM decision value | 1.00 |
SVM RNA-class probability | 0.897038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1020744 103 - 27905053 GUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUGACA-------CCCCCGCUCGCCGAUCGUU-CGCGAUUGGAG-------UUCGGAAUUUUUGGACC-A-GGCUCCUUUACUUUACA ((..(((((((.(((((.((....)).)))))......-------...(((..(.(((((((..-..))))))).)-------..)))............-.-.....)))))))..)). ( -28.10) >DroVir_CAF1 73521 108 - 1 GUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUAACAAAAAACCCCCGUUCGCUGAUC----UUCGAUCGGCG-------CUCGGAAUUUUUGGAAAUA-GACUCCCUUACUUUAUA ((..(((((((.(((((.((....)).)))))......((((((....(((..((((((((----...))))))))-------..)))..))))))......-.....)))))))..)). ( -31.80) >DroGri_CAF1 80349 112 - 1 GUAUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUUAACAUCAGCCCCCGUUUGCUGAUCAUCUCGUGAUUAGCU-------UUCGGAAUUUUUGGAAAAA-GGCCCCCUUACUUUAUA (((.(((((((.(((((.((....)).)))))............(((.(((...(((((((((...))))))))).-------..)))....(((....)))-)))..))))))).))). ( -33.30) >DroWil_CAF1 74570 110 - 1 GUAUAGUGAGGACAUUGCUGCUGACACCAAAGAUAUAA-------AUCUAAGCCCCCGUUCGUU-GGUUAUUGAAGCCAAAUGAUCGGAAUUUUUGGAAA-A-GGCUCCCUUACUUUAUA (((.(((((((.....(((.......((((((((....-------))))......(((.(((((-((((.....)))).))))).))).....))))...-.-)))..))))))).))). ( -27.20) >DroMoj_CAF1 65491 105 - 1 GUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUAAU----AACCCCCGCUCGCUGAUCU-C-UGCGAUUAGCG-------UUCGGAAUUUUUGGAAA-A-GACUCCCUUACUUCAUA ....(((((((.(((((.((....)).))))).......----.....(((..((((((((.-.-...))))))))-------..)))............-.-.....)))))))..... ( -29.20) >DroAna_CAF1 65743 104 - 1 GUCUAGUGAGGGCAUUGCUGCUGACACCAAAGAUAUUA-------CCCCCGCUCACUGGUCGCC-UGCGAUCAGGG-------UUCGGAAUUUUUGGACC-AAGGCCCCCUUACUUAACA ((..((((((((....(((..((...((((((((....-------...(((..(.(((((((..-..))))))).)-------..))).))))))))..)-).))).))))))))..)). ( -35.50) >consensus GUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUAA_______CCCCCGCUCGCUGAUCGUC_UGCGAUUAGCG_______UUCGGAAUUUUUGGAAA_A_GGCUCCCUUACUUUAUA ((..(((((((.(((((.((....)).))))).......................(((((((.....)))))))..................................)))))))..)). (-17.17 = -16.98 + -0.19)
Location | 1,020,809 – 1,020,926 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.51 |
Mean single sequence MFE | -35.72 |
Consensus MFE | -22.49 |
Energy contribution | -21.97 |
Covariance contribution | -0.53 |
Combinations/Pair | 1.13 |
Mean z-score | -1.56 |
Structure conservation index | 0.63 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652087 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1020809 117 - 27905053 UGGCCACUUUUGCUUGAGGUGAG-CGCGCAUUCCAACACUCUACCUUCCUUGUCUUGGGGAGCAGAAAUGUUCAAUGAACGUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUGACA-- (((.((((((.....))))))((-((.(((.(((..((((..((...(((......)))(((((....))))).......))..)))).)))...)))))))....))).........-- ( -29.90) >DroVir_CAF1 73589 119 - 1 UGGCUGCGGCCGCAUAAGGUUGC-GCAAACUGCCAUAACUCGAUCUUCCUUGUCUUGGGGAGCAGAAAUGUCCAAUGAACGUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUAACA (((((((((((......))))))-)......))))...............(((((((((.(((((.(((((((.....((.....))..))))))).)))))..).)))).))))..... ( -37.00) >DroGri_CAF1 80421 119 - 1 AAGCGACGGCUGCUUGAGUUGCC-GCAACUUGCCAGCAAUCGACCUUCCUUGUCUUGGGGAGCAGAAAUGUCCAAUGAACGUAUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUUAAC ...(((..((((...((((((..-.))))))..))))..)))........(((((((((.(((((.(((((((.....((.....))..))))))).)))))..).)))).))))..... ( -36.50) >DroWil_CAF1 74642 117 - 1 UAGCAUUUUUUGCUUAAGGUUCG-GCUGCAUUCCAUCACUCUAUCUUCCUUGUCUUGGGGAGCAGAAAUGUUCAAUGAACGUAUAGUGAGGACAUUGCUGCUGACACCAAAGAUAUAA-- .((((.....))))...((((((-((.(((.(((.(((((((..((((((......)))))).))).((((((...))))))...)))))))...))).))))).)))..........-- ( -36.60) >DroMoj_CAF1 65557 119 - 1 UGACUGUCGGCGCUUAAGGUCUCUGGCAUUUGCCAACGAUCGUCCUUCCUUGUCUUGGGGAGCAGAAAUGUUCAAUGAACGUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUAAU- ....(((((((((....((((..((((....))))..))))(((((..(((((.(((..(((((....)))))..))))))...))..)))))...)).))))))).............- ( -40.40) >DroAna_CAF1 65809 117 - 1 AAGCGAAAUUUUCAUGAGGUUGG-CUGAAAUGCCGAUACUCUACCUUCCUUGUCUUGGGGAGCAGAAAUGUCCAAUGAACGUCUAGUGAGGGCAUUGCUGCUGACACCAAAGAUAUUA-- ...............((((((((-(......)))))).))).........(((((((((.(((((.(((((((.....((.....))..))))))).)))))..).)).))))))...-- ( -33.90) >consensus UAGCGACGGUUGCUUAAGGUUCC_GCAACAUGCCAACACUCGACCUUCCUUGUCUUGGGGAGCAGAAAUGUCCAAUGAACGUCUAGUGAGGACAUUGCUGCUGACACCAAUGAUAUAA__ ..................................................(((((((((.(((((.(((((((.....((.....))..))))))).)))))..).)))).))))..... (-22.49 = -21.97 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:55 2006