Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,025,075 – 7,025,177 |
Length | 102 |
Max. P | 0.745398 |
Location | 7,025,075 – 7,025,177 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 82.84 |
Mean single sequence MFE | -36.25 |
Consensus MFE | -20.97 |
Energy contribution | -23.72 |
Covariance contribution | 2.75 |
Combinations/Pair | 1.16 |
Mean z-score | -2.94 |
Structure conservation index | 0.58 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745398 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7025075 102 - 27905053 UCAUUUAGUUUGGGGCGGUUGCUUUUGCGUAGUUCUC---GCAAAUCCUACGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..(((((((((.......)---)))))...((((((((((((.(((((....)))))))))).))))-)))))))))))))))))... ( -40.70) >DroSec_CAF1 24015 102 - 1 UCAUUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUAUC---GCAAAUCCUAAGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..((.((((((.......)---))))).))...(((((((((.(((((....)))))))))).))))-......)))))))))))... ( -38.80) >DroSim_CAF1 38324 102 - 1 UCAUUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUCUC---GCAAAUCCUAAGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..((.((((((.......)---))))).))...(((((((((.(((((....)))))))))).))))-......)))))))))))... ( -38.80) >DroEre_CAF1 22990 102 - 1 UUAAUUAGUUUGGAGCGGUUGGUUUUGCGUAGUUCUC---GCAAAUCCUAUACUCCCAGUUGGCCUGUCAAGGUCACUGAUGAGU-GUGAGUCCGUUGGCUGAUUA .(((((((((...(((((..((.((((((.......)---))))).))(((((((.((((.(((((....)))))))))..))))-)))...)))))))))))))) ( -38.10) >DroYak_CAF1 24615 102 - 1 UUAAUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUCUC---GCAAAUCCUAUACUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU-GUGAGUCCGUUUGCUGAUUA .((((((((...((((....((.((((((.......)---))))).))((((((((((((.(((((....)))))))))).))))-))).))))....)))))))) ( -43.80) >DroPer_CAF1 29085 88 - 1 UUAAUUAGUUUGAAGCGGUUGCAUUUGCGUUGUUCUAUGAGCGAAUCCAGA-----------GAUUGUCAAGGUUACUGCUGUUCGGUGGGGCAGUUGG------- ........(((((.....(((.((((((............)))))).))).-----------.....)))))....(.(((((((....))))))).).------- ( -17.30) >consensus UCAAUUAGUUUGGGGCGGUUGGUUUUGCGUAGUUCUC___GCAAAUCCUAAGCUCCCAGUUGGCCUGUCAAGGUCACUGGUGAGU_GUGAGUCCGUUCGCUGAUUA ....(((((...((((((..((.(((((............))))).))...(((((((((.(((((....)))))))))).)))).......)))))))))))... (-20.97 = -23.72 + 2.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:09 2006