Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,024,387 – 7,024,487 |
Length | 100 |
Max. P | 0.681751 |
Location | 7,024,387 – 7,024,487 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 80.38 |
Mean single sequence MFE | -22.88 |
Consensus MFE | -12.54 |
Energy contribution | -13.54 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.16 |
Mean z-score | -2.00 |
Structure conservation index | 0.55 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7024387 100 - 27905053 AGAUCAAAUGGCAGAUAAUACCUCUUGUUUGAACAUUAAAGCUGAUUGGUUAAUAAAUGAGUUUAUUGAUCGAUUGAAAUAA----------------UGUUAACUUACAAAUAAG .......................(((((((((((((((...(.((((((((((((((....)))))))))))))))...)))----------------))))......)))))))) ( -19.40) >DroSec_CAF1 23343 99 - 1 AGAUUAAUUGGU-GAUAAUACCUCUUGUUUGCACAUUAAAGCUGAUUGGUUUAUAAAUGAGUUUACUGAUCGAUUGAAAUAA----------------UGUUACCUUACAAACAAU .........(((-((((.((..((..((((........))))((((..((..((......))..))..))))...))..)).----------------)))))))........... ( -15.00) >DroSim_CAF1 37621 99 - 1 AGAUUAAUUGGU-GAUAAUACCUCUUGUUUGCACAUUAAAGCUGAUUGGUUAAUAAAUGAGUUUAUUGAUCGAUUGAAAUAA----------------UGUUAACUUACAAACAAU .........(((-(....))))..(((((((.((((((...(.((((((((((((((....)))))))))))))))...)))----------------))).......))))))). ( -19.20) >DroEre_CAF1 22258 116 - 1 AGAUUAAUUGGUAGAUAAUAGCUAUUGGUUACACAUUAAUGUUGAUGGAUUAAUAAAUGAGUAUAUUGAUCUAUUGAAUUGAAGUAAGGGCACAGCUAUGUUCACUUACAAAGAAU ....((((..((((.......))))..))))....(((((.(..(((((((((((........)))))))))))..)))))).(((((((.(((....))))).)))))....... ( -26.50) >DroYak_CAF1 23880 116 - 1 AGAUUAAUUGGUAGAUAAUAGCUGUUGUUUGCACAUUAAUGCUGAUUGGUUAAUAAAUGAGUAUAUUGAUCGAUUGCAUUAAUGAAAGGGCACAGCUAUCUUAACUUACAAGCAAU .......(((..((.((((((((((.((((...(((((((((.((((((((((((........)))))))))))))))))))))...))))))))))))..)).))..)))..... ( -34.30) >consensus AGAUUAAUUGGUAGAUAAUACCUCUUGUUUGCACAUUAAAGCUGAUUGGUUAAUAAAUGAGUUUAUUGAUCGAUUGAAAUAA________________UGUUAACUUACAAACAAU .......(((((((((((......))))))))...........((((((((((((((....)))))))))))))).................................)))..... (-12.54 = -13.54 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:07 2006