Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,021,463 – 7,021,568 |
Length | 105 |
Max. P | 0.555460 |
Location | 7,021,463 – 7,021,568 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 83.61 |
Mean single sequence MFE | -28.56 |
Consensus MFE | -19.82 |
Energy contribution | -19.90 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.09 |
Mean z-score | -1.64 |
Structure conservation index | 0.69 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7021463 105 + 27905053 GAAAAUAAAAUGAA-GUGG--C----------UCUUUUUCAGUGCAUUGCAUUUGGAUUUUCAUUUCGAAAUCAAAACUGCCGAAUCCUGUCCCUCGGGCAGGAAACUAGGCUCCGUC ((((((.(((((..-...(--(----------.((.....)).))....)))))..)))))).................(((...((((((((...)))))))).....)))...... ( -27.10) >DroSec_CAF1 20479 105 + 1 CAAAUUAAAAUGCA-GAUA--C----------UCCUUUUCAGUGCAUUGCAUUUGGGUUUUCAUUUCGAAAUCAAAACUGCCGACUCCUGUCCCUCGGGCAGGAAACUAGGCUCCGUC .......(((((((-(.((--(----------(.......))))..))))))))(((((((.(((....))).))))).(((...((((((((...)))))))).....))).))... ( -26.90) >DroSim_CAF1 34764 105 + 1 CAAAAUAAAAUGCA-GAUA--C----------UCCUUUUCAGUGCAUUGCAUUUGGGUUUUCAUUUCGAAAUCAAAACUGCCGACUCCUGUCCCUCGGGCAGGAAACUAGGCUCCGUC .......(((((((-(.((--(----------(.......))))..))))))))(((((((.(((....))).))))).(((...((((((((...)))))))).....))).))... ( -26.90) >DroEre_CAF1 19495 118 + 1 CAAAAUGCAUUGAAGGGUAUACUUUUACCACCACCUUUUCAGUGCAUUGCAUUUGGGUUUUCAUUUUGAUAUCACAACUGCCGAGUCCUGUCCCUCGGGCAGGAAACUAGGCUUCGUC ...((((((((((((((((......)))).......))))))))))))....((((((..((.....)).))).)))..(((...((((((((...)))))))).....)))...... ( -34.61) >DroYak_CAF1 21057 118 + 1 CAUAAUACAUUGAAAGAUACACUUUUGUCGCCACAUUUUCAGUGCAUUUCAUUUGGGUUUUCAUUUUGGAAUCACAACUGCCGAGUCCUGUCCCUCGGGCAGGAAACUAGGCUUCGUC ...........(((.((((......))))(((.........(((.((((((..(((....)))...))))))))).......(..((((((((...))))))))..)..))))))... ( -27.30) >consensus CAAAAUAAAAUGAA_GAUA__C__________UCCUUUUCAGUGCAUUGCAUUUGGGUUUUCAUUUCGAAAUCAAAACUGCCGACUCCUGUCCCUCGGGCAGGAAACUAGGCUCCGUC ........................................(((((...)))))..((((((......))))))......(((...((((((((...)))))))).....)))...... (-19.82 = -19.90 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:06 2006