Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,021,034 – 7,021,125 |
Length | 91 |
Max. P | 0.683338 |
Location | 7,021,034 – 7,021,125 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 76.53 |
Mean single sequence MFE | -21.15 |
Consensus MFE | -12.19 |
Energy contribution | -13.25 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.19 |
Mean z-score | -1.88 |
Structure conservation index | 0.58 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7021034 91 - 27905053 AUUAGGAGGCGCCAUACCCCAAUUUAAGCCUCCCCCCCUGCUACGCCCAUUUUAUCCAUGGAACUCUUGGCU--AGACCUUGGGUAUCUGUAU ....((((((.................)))))).....(((...(((((.((((.(((.((....))))).)--)))...)))))....))). ( -22.33) >DroSec_CAF1 20034 76 - 1 AUUAGGAGGCGCCA---------------CCCCCACCCUGCUACGCCCAUUUUAUCCAUGGUAUCCAUGGCC--UGACCAUGGGUAUCUGUAU ....(((((((...---------------..............)))).......)))..(((((((((((..--...)))))))))))..... ( -21.34) >DroSim_CAF1 34335 76 - 1 AUUAGGAGGCGCCA---------------CCCCCACCCUGCUACGCCCAUUUUAUCCAUGGUAUCCAUGGCC--UGACCAUGGGUAUCUGUAU ....(((((((...---------------..............)))).......)))..(((((((((((..--...)))))))))))..... ( -21.34) >DroYak_CAF1 20657 78 - 1 UUUAUGAGUAGCCC---------------CCUCCCCUUUGCUACGCCCAUCACAUCCAUUGGAUCCAUGGCCAUGGACCAUGGGUAUCUGUAU .......(((((..---------------..........)))))((((((....(((((.((........)))))))..))))))........ ( -19.60) >consensus AUUAGGAGGCGCCA_______________CCCCCACCCUGCUACGCCCAUUUUAUCCAUGGUAUCCAUGGCC__UGACCAUGGGUAUCUGUAU ..(((((((((................................))))..))))).....((((((((((((....).)))))))))))..... (-12.19 = -13.25 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:05 2006