Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,009,773 – 7,009,875 |
Length | 102 |
Max. P | 0.613601 |
Location | 7,009,773 – 7,009,875 |
---|---|
Length | 102 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 88.73 |
Mean single sequence MFE | -20.38 |
Consensus MFE | -18.61 |
Energy contribution | -18.30 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.14 |
Mean z-score | -1.36 |
Structure conservation index | 0.91 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613601 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7009773 102 + 27905053 AUUCGGGUUCCUUCAGUGUUUGUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC ..(((((.........................)))))((((((((((.((((((((...((....))....))))))))..))))))))))........... ( -22.41) >DroSec_CAF1 8774 102 + 1 AUUCGGUUUCCUCCAGCGCUUCUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC ....((......)).....................((((((((((((.((((((((...((....))....))))))))..))))))))))))......... ( -21.90) >DroSim_CAF1 22496 102 + 1 AUUCGGUUUUCUCCAGCGUUUGUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC ....((......)).((((.((.............((((((((((((.((((((((...((....))....))))))))..))))))))))))))...)))) ( -22.21) >DroAna_CAF1 8513 96 + 1 CAUUGUCCUUUUUCAG-GCUU-AUUUAUUUUU----GGUGUUUUUAUUGUUGUCAUGUUGCUUUGGUCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC ....(.(((.....))-))..-..........----((..(((((((.((((((((...((....))....))))))))..)))))))..)).......... ( -15.00) >consensus AUUCGGUUUCCUCCAGCGCUUGUUUUAUUUUUCCUGAGCGUUUUUAUUGUUGUCAUGUUGCUUUGGCCGUAAUGGCAGCUCGUAAAAAUGUUUCAUUUAUGC ...................................((((((((((((.((((((((...((....))....))))))))..))))))))))))......... (-18.61 = -18.30 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:03 2006