Locus 2592

Sequence ID 3R_DroMel_CAF1
Location 7,008,448 – 7,008,539
Length 91
Max. P 0.572430
window4223

overview

Window 3

Location 7,008,448 – 7,008,539
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 86.25
Mean single sequence MFE -22.26
Consensus MFE -14.58
Energy contribution -15.02
Covariance contribution 0.44
Combinations/Pair 1.06
Mean z-score -1.98
Structure conservation index 0.65
SVM decision value 0.08
SVM RNA-class probability 0.572430
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 7008448 91 - 27905053
UUUAUAGCCAAGUUACCAGCACCAGUUGGUAGCGAGUAGAAAUCGCAAUCGCAAUAGCAGUGGCAAUUGCAAUGGCAAUGGCAAAAGCAAA
......((((.(((((((((....)))))))))...........((.((.(((((.((....)).))))).)).))..))))......... ( -29.50)
>DroSec_CAF1 7419 85 - 1
UUUAUAGCCAACUUCCCAGCACCAGUUGGUAGAGAGUAGAAAUCGCAAUCGCAAUAGCGGUGGCAAUAG------CAAUGGCAACAGCAAA
......((((((((.(((((....)))))....)))).......((.(((((....))))).)).....------...))))......... ( -22.10)
>DroSim_CAF1 21150 85 - 1
UUUAUAGCCAACUUCCCAGCACCAGUUGGUAGCGAGUAGAAAUCGAGAUCGCAAUAGCGGUGGCAAUAG------CAAUGGCAACAGCAAA
......((((.........((((.((((...((((...(....)....))))..))))))))((....)------)..))))......... ( -21.10)
>DroEre_CAF1 7391 84 - 1
UUUAUAGCCAAGCACCCAACACC-GUUGGUAGCGAGUAGAAAUCGCAAUCGCAAUAGCAGUGGCAAUAG------CAACAGCAAAAGCACA
.((((.((((.((..(((((...-)))))..((((...(....)....))))....))..)))).))))------.....((....))... ( -19.50)
>DroYak_CAF1 7492 84 - 1
UUUAUAGCCAAGUCCACAGCACC-GUUGGUAGCGAGUAGAAAUCGCAAUCGCAAUGGCAAUAGCAGUGG------CAAUAGCAACAGCAAA
......((.....((((.((.((-(((((..((((.......))))...).)))))).....)).))))------.....))......... ( -19.10)
>consensus
UUUAUAGCCAAGUUCCCAGCACCAGUUGGUAGCGAGUAGAAAUCGCAAUCGCAAUAGCAGUGGCAAUAG______CAAUGGCAACAGCAAA
......((((.....(((((....)))))..((((...(....)....))))........))))................((....))... (-14.58 = -15.02 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:40:02 2006