Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 7,003,551 – 7,003,662 |
Length | 111 |
Max. P | 0.510806 |
Location | 7,003,551 – 7,003,662 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -23.95 |
Consensus MFE | -13.74 |
Energy contribution | -14.55 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.09 |
Mean z-score | -2.05 |
Structure conservation index | 0.57 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.510806 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 7003551 111 - 27905053 AUUUUAAUCUUUUAGGUGUAAAUUCAAGUUGAAAGACU-UGUUUGGCGCCGCCACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAACAUUUACAA ..(((((((.....(((((.....((((((....))))-))....))))).....(((((......))))))))))))....((((.......))))............... ( -29.00) >DroSec_CAF1 2623 111 - 1 AUUUUAAUCUUUUAAAUGUAAAUUCAAGGUGAAAAAUU-UGUUUGGCGCCGCUACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAGCAUUUACAA ................(((((((....((((..(((..-..)))..))))(((.((((((......))))))..........((((.......))))....)))))))))). ( -25.40) >DroSim_CAF1 16507 109 - 1 AUUUUAAUCUUUUAUUUGUAAAAUCAAGGUGAAAAAUU---UUUGGCGCCGCCACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAGCAUUUACAA ...............(((((((.....((((..((...---.))..))))((..((((((......))))))..........((((.......)))).....)).))))))) ( -22.20) >DroYak_CAF1 2747 97 - 1 ACUUUAAUCUUUUAAGUGUAAAUUCAAGUUGAAGGAUAUUCUUUGGCGCCUACACGGUCAUUUAACAGACUGAUUAGAUAAACCGCUAUCAAUGC---------------AA ..(((((((......(((((.......((..((((....))))..))...)))))((((........)))))))))))......((.......))---------------.. ( -19.20) >consensus AUUUUAAUCUUUUAAGUGUAAAUUCAAGGUGAAAAAUU_UGUUUGGCGCCGCCACGGUCAUUUAACUGACUGAUUAGAUAACUCGCUAUCAAUGCGAAAUAAGCAUUUACAA ..(((((((..................((((..(((.....)))..)))).....(((((......))))))))))))....((((.......))))............... (-13.74 = -14.55 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:58 2006