Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,986,773 – 6,986,887 |
Length | 114 |
Max. P | 0.961582 |
Location | 6,986,773 – 6,986,887 |
---|---|
Length | 114 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.42 |
Mean single sequence MFE | -39.10 |
Consensus MFE | -34.80 |
Energy contribution | -35.48 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.09 |
Mean z-score | -2.69 |
Structure conservation index | 0.89 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961582 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6986773 114 - 27905053 UGGCUGAAAUCGCUUUUGGGGCUUUACCCAGAUGCGAUUGCAAACUGAUGUGAUGUGCGUUCAGAUUCAUACCU------AUACGAGACUAUGGUGUGCAGCUGAAUAGUCGCUUCAGAU ..((...((((((.((((((......)))))).))))))))...((((.(((((....((((((...((((((.------(((......)))))))))...)))))).))))).)))).. ( -42.80) >DroSim_CAF1 21946 114 - 1 UGGCUGAAAUCGCUUUUGGGGCUUUACCCAGAUGCGAUUUGCAACUGAUGUGAUGUGCGUUCAGAUUCAUACCU------AUACGACACUAUGGUGUGCAGCUGAAUAGUCGCUUCAGAU ..((..(((((((.((((((......)))))).)))))))))..((((.(((((....((((((...((((((.------(((......)))))))))...)))))).))))).)))).. ( -44.10) >DroEre_CAF1 27372 120 - 1 UGGCUGAAAUUGUUAUUGGGGCUUUACCCAAAUGUUAUUGUAAGCUGAUGUGAUGUGCGUUCAGAUUCAUACCUACGAGUAUACGAGACGAUGGUGUGCAGCUGAAUAGGGGCUUCAGAU .((((..(((.....(((((......))))).....)))...)))).((.(((.((.(((((((...((((((..((...........))..))))))...))))))..).)).))).)) ( -30.40) >consensus UGGCUGAAAUCGCUUUUGGGGCUUUACCCAGAUGCGAUUGCAAACUGAUGUGAUGUGCGUUCAGAUUCAUACCU______AUACGAGACUAUGGUGUGCAGCUGAAUAGUCGCUUCAGAU .......((((((.((((((......)))))).)))))).....((((.(((((....((((((...((((((...................))))))...)))))).))))).)))).. (-34.80 = -35.48 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:56 2006