Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,986,393 – 6,986,499 |
Length | 106 |
Max. P | 0.976375 |
Location | 6,986,393 – 6,986,499 |
---|---|
Length | 106 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.48 |
Mean single sequence MFE | -19.47 |
Consensus MFE | -11.51 |
Energy contribution | -11.40 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.13 |
Mean z-score | -2.90 |
Structure conservation index | 0.59 |
SVM decision value | 1.77 |
SVM RNA-class probability | 0.976375 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6986393 106 - 27905053 AAGCUCAGAAAAAUUCCCCGAUAUG-UAAUAAAACAAUAUAUAUCAGUC----------UACCAGCCUACUUUGCUACAUGACAAGCCAAUUCAAG---UGCAUUCUGAGCGAAAUAAAU ..((((((((.........((((((-((.........)))))))).(((----------....(((.......)))....))).............---....))))))))......... ( -23.40) >DroSim_CAF1 21593 106 - 1 AAGCUCAGAAAAAUUCCCCGAUAAG-UAAUAAAACAAUAUAUAUCAGUC----------UACCAGCCUACUUUGCUAUAUGACAAACCAAUUCAAA---UGCAUUCUGAGCGAAAUACUU ..((((((((.........((((.(-((.........))).)))).(((----------....(((.......)))....))).............---....))))))))......... ( -19.60) >DroEre_CAF1 26973 120 - 1 AAUCUCAGAAAAAUUCCCCGAUGAUUCUAUAAAACCAUAUAUAUCAGUGUAUAAUAUAUUACCAGUCUACUUUGCUACAUAGCAAAAUUAUUUAAAUUAUUCAUUCUGAGCGAAAUACCU ...(((((((.........((((((..((((......)))).))).(.(((........)))).)))...((((((....)))))).................))))))).......... ( -15.40) >consensus AAGCUCAGAAAAAUUCCCCGAUAAG_UAAUAAAACAAUAUAUAUCAGUC__________UACCAGCCUACUUUGCUACAUGACAAACCAAUUCAAA___UGCAUUCUGAGCGAAAUACAU ..((((((((.........((((..................))))..................(((.......)))...........................))))))))......... (-11.51 = -11.40 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:55 2006