Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,979,100 – 6,979,219 |
Length | 119 |
Max. P | 0.627615 |
Location | 6,979,100 – 6,979,219 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 77.30 |
Mean single sequence MFE | -32.78 |
Consensus MFE | -12.70 |
Energy contribution | -12.70 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.38 |
Mean z-score | -1.91 |
Structure conservation index | 0.39 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.627615 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6979100 119 - 27905053 UUAGGAGACAUUGGAGCCUUGUGGGCAUC-UAUCCAAAAGACAUAUACUCAGAAUCUCAUCGAUCAUUAUCAAAUGGGAUUUCGCAUCACCAGAGGCCUUUUCGAGGACUCCAAUUUCCA ...(((((..(((((((((((.((((.((-(........((.......)).(((((((((.(((....)))..))))))))).........))).))))...))))).))))))))))). ( -36.10) >DroPse_CAF1 49077 119 - 1 CUAGGAGACCUGGCCGCCCUGUGGCAGUC-CAUACAGAAACCUCUCACCCAAAAGCUAAUAGAUCAUUAUCAUAUGGGUUUUCGCCUCACACGAGCGCUCUUUGUGGACCCCAAUUUUCA ....((((..(((((((...))))).(((-((((.(((........(((((...(.((((.....)))).)...)))))....(((((....))).))))).)))))))..))..)))). ( -31.20) >DroEre_CAF1 18337 119 - 1 UUAGGAGACAUUGCGGCCUUGUGGGCAUC-GAUCCAAAAGCCAGUGACUCAGAAACUUAUUGAUCACUAUCAGAUGGGUUUCCGCAUCACAAGAGGACUCUUCGAGGACUCCAAUUUCCA ...(((((......(((....((((....-..))))...))).((((..(.(((((((((((((....)))).))))))))).)..))))..(((..(((...)))..)))...))))). ( -34.40) >DroAna_CAF1 14916 119 - 1 ACAGGCGACAUUGCUGCCUUGUGGGAUUC-GAUCAAUAAGCCUUUGACGCAGAAGCUUAUUGAUCACUAUCAAAUGGGUUUCCGACUCACAAGAGGUCUUUUUGUGGAUCCUAACUUUCA ..(((((.......)))))..((((((((-(((((((((((.((((...)))).))))))))))).....((((.((..(((..........)))..)).)))).))))))))....... ( -36.50) >DroPer_CAF1 49865 120 - 1 CUAGGAGACCUGGCCGCCCUGUGGCAGUCCCAUACAGAAACCUCUCACCCAAAAGCUAAUAGAUCAUUAUCAUAUGGGUUUUCGCCUCACACGAGCACUCUUUGUGGACCCCAAUUUUCA ...((.(((...(((((...))))).)))(((((.(((........(((((...(.((((.....)))).)...)))))....((.((....))))..))).)))))...))........ ( -25.70) >consensus CUAGGAGACAUUGCCGCCUUGUGGGAAUC_CAUCCAAAAGCCUCUCACCCAGAAGCUAAUAGAUCAUUAUCAAAUGGGUUUUCGCCUCACAAGAGGACUCUUUGUGGACCCCAAUUUUCA ...(((((.........(((((((............((......)).....(((((((((((((....))).))))))))))....))))))).((..(((....)))..))..))))). (-12.70 = -12.70 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:53 2006