Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,978,669 – 6,978,788 |
Length | 119 |
Max. P | 0.555492 |
Location | 6,978,669 – 6,978,788 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.37 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -18.08 |
Energy contribution | -17.20 |
Covariance contribution | -0.88 |
Combinations/Pair | 1.25 |
Mean z-score | -1.41 |
Structure conservation index | 0.64 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555492 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6978669 119 + 27905053 AAAAGGCGUUCGUACAGCGACAUGUGAUCGUUAAAGGGUAGCAUUAUGUGGGGCACGAACGAAGCUGGAGCGGGGGAACCAACCUGAAAA-AGUUAAAAUAUAUUUAGUAUUUCAAAUAA ......(((((((...((..((((((((.((((.....))))))))))))..))))))))).((((....((((........))))....-)))).((((((.....))))))....... ( -28.70) >DroPse_CAF1 48794 108 + 1 ACCAGGCGCUCAUACAGCGACAUGUGAUCGUUGAAGGGCAACAUUAUGUGGGGCACAAACGAAGCGGGAGCUGGGGAGCCCACCUAAAGG-AGGAAACAGAAAGUUAGC----------- .((.((.((((...((((..(.(((..(((((.....((..(((...)))..))...))))).))))..))))..)))))).((....))-.))...............----------- ( -33.10) >DroEre_CAF1 17971 104 + 1 AAAAGCCGUUCGUACAGCGACAUGUGAUCGUUGAAGGGUAGCAUUAUGUGGGGCACAAACGAAGCAGGAGCGGGAGAACCAACCUGAAAA--GGAAAAAUGUAUUC-------------- .....((((((.....((..((((((((.((((.....))))))))))))..)).....(......))))))).........(((....)--))............-------------- ( -24.00) >DroAna_CAF1 14624 111 + 1 AUAAAACGCUCGUAGAGUGACAUGUGAUCAUUGAAUGGCAACAUUAUGUGAGGAACAAAAGAAGCUGGAGCUGGAGAGCCAACCUGGGAAAAGACAGAGUAUGUG---------AAAAAA .......((((.(((.......(((..((((..((((....))))..))))...))).......)))))))(((....)))(((((........))).)).....---------...... ( -22.44) >DroPer_CAF1 49582 108 + 1 ACCAGGCGCUCAUACAGCGACAUGUGAUCGUUGAAGGGCAACAUUAUGUGGGGCACAAACGAAGCGGGAGCUGGGGAGCCCACCUAAAGG-AGGAAACAGAAAGUUAGC----------- .((.((.((((...((((..(.(((..(((((.....((..(((...)))..))...))))).))))..))))..)))))).((....))-.))...............----------- ( -33.10) >consensus AAAAGGCGCUCGUACAGCGACAUGUGAUCGUUGAAGGGCAACAUUAUGUGGGGCACAAACGAAGCGGGAGCUGGGGAGCCAACCUGAAAA_AGGAAAAAUAUAUUUAG____________ .......((((.....((..((((((((.((((.....))))))))))))..)).........((....))....))))......................................... (-18.08 = -17.20 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:52 2006