Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,971,225 – 6,971,324 |
Length | 99 |
Max. P | 0.647038 |
Location | 6,971,225 – 6,971,324 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.96 |
Mean single sequence MFE | -20.99 |
Consensus MFE | -15.47 |
Energy contribution | -15.26 |
Covariance contribution | -0.21 |
Combinations/Pair | 1.21 |
Mean z-score | -2.18 |
Structure conservation index | 0.74 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.647038 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6971225 99 - 27905053 GGCCAGAUAAAAAAGCACCCGAACGGGGUAAAACGAAUUGAAAAUAGCCAAAUGGCUAAAAAGAUUAGAAGCUGCAUGGGGUGA-AUGAGUUGGGGAAAU ..((((.........(((((.(..(.(((......((((.....(((((....)))))....))))....))).).).))))).-.....))))...... ( -21.66) >DroEre_CAF1 10769 99 - 1 GGCCAGAUAAAACAGCACCCGAACGGGGUAAAACGAAUUGAAAAUAGCCAAAUGGCUAAAAAGAUUAGAAGCUGCAAGGGGCGA-AUGAGUUUGGAAAAU ..((((((......((.(((....(.(((......((((.....(((((....)))))....))))....))).)..)))))..-....))))))..... ( -23.50) >DroAna_CAF1 8139 99 - 1 GGCCAGAUAAAA-AGCGAGCGAACGGAGUAAAACGAAUUGAAAAUGGCCAAAUGGUUAGAAAGAUUAGACGCUGCGAGGGGUAAAAUGGGUGGGGGAACU ..(((.((....-.((.((((..((........))((((.....(((((....)))))....))))...)))))).....))....)))...((....)) ( -17.80) >consensus GGCCAGAUAAAA_AGCACCCGAACGGGGUAAAACGAAUUGAAAAUAGCCAAAUGGCUAAAAAGAUUAGAAGCUGCAAGGGGUGA_AUGAGUUGGGGAAAU .(((.........(((((((.....))))......((((.....(((((....)))))....))))....)))......))).................. (-15.47 = -15.26 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:46 2006