Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 996,752 – 996,846 |
Length | 94 |
Max. P | 0.818503 |
Location | 996,752 – 996,846 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -36.22 |
Consensus MFE | -25.61 |
Energy contribution | -28.12 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.71 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 996752 94 + 27905053 GUGGCUGUCCCGCAUUUUUCCUGCAGUUUUCCCUGUUGCUUCU------GCGGUGUCGCCACCGCCAGCUGGGGGAUAUUGACAGCGGCGGAUCGGGAGU .......(((((.(((..(((((((((.((((((...(((...------((((((....)))))).))).)))))).)))).))).))..)))))))).. ( -39.30) >DroPse_CAF1 52275 83 + 1 GCGGCUUGUCCGCAGUUUUCGCGCAGUUUUCCCUGUUGCUUUCCCACCAGCAGCAGCUGGAGCACCAGCUGGAGGAUAUUGAC----------------- ((((.....))))............(((((((..((((((........))))))((((((....)))))))))))))......----------------- ( -27.80) >DroSec_CAF1 41590 94 + 1 GUGGUUGUCCCGCAUUUUUCCUGCAGUUUUCCCUGUUGCUUCU------GCGGUGUGGCCACCGCCAGCUGGGGGAUAUUGACAGCGGCGGAUCGGGAGU .......(((((.(((..(((((((((.((((((...(((...------((((((....)))))).))).)))))).)))).))).))..)))))))).. ( -39.30) >DroSim_CAF1 43980 94 + 1 GUGGCUGUCCCGCAUUUUUCCUGCAGUUUUCCCUGUUGCUUCU------GCGGUGUGGCCACCGCCAGCUGGGGGAUAUUGACAGCGGCGGAUCGGGAGU .......(((((.(((..(((((((((.((((((...(((...------((((((....)))))).))).)))))).)))).))).))..)))))))).. ( -39.30) >DroEre_CAF1 43856 93 + 1 GUG-CUGUCCCGCAUUUUUCCUGCAGCUUUCCCUGUUGCUUCU------GCGGUGUGGCCACUGCCAGCUGGGGGAUAUUGACAGCGGCGGAUCGGGAGU ...-...(((((.(((..((((((((..((((((...(((...------((((((....)))))).))).))))))..))).))).))..)))))))).. ( -35.80) >DroYak_CAF1 46177 94 + 1 GUGGCUGUUCCGCAUUUUUCCUGCAGUUUUCCCCGUUGCUUCU------GCGGUGUGGCCACUGUCAGCUGGGGGAUAUUGACAGCGGCGGAUCGGAAGU ....(((.(((((.......(((((((.(((((((..(((...------((((((....)))))).)))))))))).)))).)))..))))).))).... ( -35.80) >consensus GUGGCUGUCCCGCAUUUUUCCUGCAGUUUUCCCUGUUGCUUCU______GCGGUGUGGCCACCGCCAGCUGGGGGAUAUUGACAGCGGCGGAUCGGGAGU .......(((((.(((..(((((((((.((((((((((...........((((((....)))))))))).)))))).)))).))).))..)))))))).. (-25.61 = -28.12 + 2.50)
Location | 996,752 – 996,846 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -33.00 |
Consensus MFE | -21.69 |
Energy contribution | -23.38 |
Covariance contribution | 1.70 |
Combinations/Pair | 1.21 |
Mean z-score | -2.47 |
Structure conservation index | 0.66 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 996752 94 - 27905053 ACUCCCGAUCCGCCGCUGUCAAUAUCCCCCAGCUGGCGGUGGCGACACCGC------AGAAGCAACAGGGAAAACUGCAGGAAAAAUGCGGGACAGCCAC ..............((((((....((((...(((.((((((....))))))------...)))....))))...(((((.......)))))))))))... ( -39.30) >DroPse_CAF1 52275 83 - 1 -----------------GUCAAUAUCCUCCAGCUGGUGCUCCAGCUGCUGCUGGUGGGAAAGCAACAGGGAAAACUGCGCGAAAACUGCGGACAAGCCGC -----------------(((....((((.(((((((....))))))).((((........))))...))))......((((.....)))))))....... ( -26.20) >DroSec_CAF1 41590 94 - 1 ACUCCCGAUCCGCCGCUGUCAAUAUCCCCCAGCUGGCGGUGGCCACACCGC------AGAAGCAACAGGGAAAACUGCAGGAAAAAUGCGGGACAACCAC ..(((((........((((.....((((...(((.((((((....))))))------...)))....)))).....))))........)))))....... ( -33.19) >DroSim_CAF1 43980 94 - 1 ACUCCCGAUCCGCCGCUGUCAAUAUCCCCCAGCUGGCGGUGGCCACACCGC------AGAAGCAACAGGGAAAACUGCAGGAAAAAUGCGGGACAGCCAC ..............((((((....((((...(((.((((((....))))))------...)))....))))...(((((.......)))))))))))... ( -37.80) >DroEre_CAF1 43856 93 - 1 ACUCCCGAUCCGCCGCUGUCAAUAUCCCCCAGCUGGCAGUGGCCACACCGC------AGAAGCAACAGGGAAAGCUGCAGGAAAAAUGCGGGACAG-CAC ..............((((((....((((...(((.((.(((....))).))------...)))....))))...(((((.......))))))))))-).. ( -32.30) >DroYak_CAF1 46177 94 - 1 ACUUCCGAUCCGCCGCUGUCAAUAUCCCCCAGCUGACAGUGGCCACACCGC------AGAAGCAACGGGGAAAACUGCAGGAAAAAUGCGGAACAGCCAC ....(((....((((((((((............))))))))))......((------....))..)))((....(((((.......))))).....)).. ( -29.20) >consensus ACUCCCGAUCCGCCGCUGUCAAUAUCCCCCAGCUGGCGGUGGCCACACCGC______AGAAGCAACAGGGAAAACUGCAGGAAAAAUGCGGGACAGCCAC ..............((((((....((((...(((.((((((....)))))).........)))....))))...(((((.......)))))))))))... (-21.69 = -23.38 + 1.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:50 2006