Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,968,334 – 6,968,427 |
Length | 93 |
Max. P | 0.681731 |
Location | 6,968,334 – 6,968,427 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 85.66 |
Mean single sequence MFE | -26.48 |
Consensus MFE | -16.74 |
Energy contribution | -16.62 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.09 |
Mean z-score | -2.28 |
Structure conservation index | 0.63 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.681731 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6968334 93 - 27905053 UUUGGUUUUUCUUCUAUUUUCAUGUGGCAUUUGUGGCUGUUUACCUCGCCAGCGGCCAAAAUGCAAUUUAUGUG-------------UUGAGAGC--GAGUUUCAUUU ..(((..(((.((((.....((((..((((((.((((((((.........))))))))))))))....))))..-------------...)))).--)))..)))... ( -24.10) >DroSec_CAF1 6260 93 - 1 UUUGGUUUUUCUUCUAUUUUCAUGUGGCAUUUGUGGCUGUUUACCUCGCCAGCGGCCAAAAUGCAAUUUAUGUG-------------UUGAGAGC--GAGAUUCAUUU ....(..((((((((.....((((..((((((.((((((((.........))))))))))))))....))))..-------------...)))).--))))..).... ( -24.90) >DroSim_CAF1 8088 93 - 1 UUUGGUUUUUCUUCUAUUUUCAUGUGGCAUUUGUGGCUGUUUACCUCGCCAGCGGCCAAAAUGCAAUUUAUGUG-------------UUGAGAGC--GAGUUUCAUUU ..(((..(((.((((.....((((..((((((.((((((((.........))))))))))))))....))))..-------------...)))).--)))..)))... ( -24.10) >DroEre_CAF1 8017 93 - 1 UGUGGUUUUUCUUCUAUUUUCAUGUGGCAUUUGUGGCUGUUUACCUCGCCAGCGGCCAAAAUGCAAUUUAUGUG-------------UUGAGAGC--GAGUUUCAUUU .((((..(((.((((.....((((..((((((.((((((((.........))))))))))))))....))))..-------------...)))).--)))..)))).. ( -25.00) >DroMoj_CAF1 4661 105 - 1 CGAGAUUCUUCUCUCAUUU---UGUGGCAUUUGCGGCUGUUUACCUCGCCAGCGGCCAAAAUGCAAUUUAUGUGCGUUGGCCAAGUGUUGAGAGUUUGGAUUUUUGCU (((((.(((.((((((...---..((((......(((((((.........)))))))..((((((.......)))))).)))).....))))))...))).))))).. ( -34.30) >consensus UUUGGUUUUUCUUCUAUUUUCAUGUGGCAUUUGUGGCUGUUUACCUCGCCAGCGGCCAAAAUGCAAUUUAUGUG_____________UUGAGAGC__GAGUUUCAUUU ........(((((.(((......)))((((((.((((((((.........)))))))))))))).........................))))).............. (-16.74 = -16.62 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:44 2006