Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,967,045 – 6,967,154 |
Length | 109 |
Max. P | 0.500000 |
Location | 6,967,045 – 6,967,154 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 93.09 |
Mean single sequence MFE | -21.33 |
Consensus MFE | -18.66 |
Energy contribution | -18.97 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.37 |
Structure conservation index | 0.88 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6967045 109 + 27905053 AUCGGCUGGAUCUCCCUUCUUCCGCCUCUCACCGCAUCUCUUUCGCUCCAAUCGCUACCCGUCUCUUUCUGUGACCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA ...(((.(((..........)))))).......((((.......((.......))..............((((((....(((...)))...)))))).))))....... ( -20.00) >DroSec_CAF1 4956 108 + 1 AUCGGCUGGAUCUCC-UCCUUCCGCCUCUCUCCGCAUCUCUUUCGCUCCAAUAGCUACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA ...(((.(((.....-....)))))).......((((.......(((.....)))..............((((((....(((...)))...)))))).))))....... ( -20.50) >DroSim_CAF1 6781 108 + 1 AUCGGCUGGAUCUCC-ACCUUCCGCCUCUCUCCGCAUCUCUUUCGCUCCAGUCGCUACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA ...(((((((.....-.......((........))...........)))))))(((((............))))).(((((((((............)))))))))... ( -23.20) >DroEre_CAF1 6734 101 + 1 AUCGGCUGGAUCUC----CUUCCGCCUCUC----CAUCUCUUUCGCUCCAAUCGCCACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAAUUCAA ...(((.(((....----..))))))....----..........((.......(((((............)))))...(((..((((....)))))))..))....... ( -21.60) >consensus AUCGGCUGGAUCUCC_UCCUUCCGCCUCUCUCCGCAUCUCUUUCGCUCCAAUCGCUACCCGUCUCUUUCUGUGGCCAAGUGCAUGGCAAAUGUCACACAUGCAUUUCAA ...(((.(((..........))))))...........................(((((............))))).(((((((((............)))))))))... (-18.66 = -18.97 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:43 2006