Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,965,232 – 6,965,325 |
Length | 93 |
Max. P | 0.594149 |
Location | 6,965,232 – 6,965,325 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.97 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -16.84 |
Energy contribution | -17.73 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.21 |
Mean z-score | -1.68 |
Structure conservation index | 0.51 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6965232 93 + 27905053 ACCCUUAAUGAGCUGCAGAUCCAGUGGUUCCAGGCUGGAAGUGCCUUGAAUCUAAUGAAGGAGCUUGCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------ ((((((...((((..(.......)..))))..(((.(.((((.((((.(......).)))).)))).).)))---------))))))...............------------------ ( -29.40) >DroSec_CAF1 3160 93 + 1 AGCCUUAACGAGCUCCAGAUCCAGUGGUUCCAGGCCGGAAGUGCCUUGAAUCUGAUGAAGGAGCUUGCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------ ...((((.((((((((..(((....(((((.(((((....).)))).))))).)))...)))))))((((((---------...))))))).))))......------------------ ( -37.90) >DroSim_CAF1 4943 93 + 1 AGCCUUAACGAGCUGCAGAUCCAGUGGUUCCAGGCCGGAAGUGCCUUGAAUCUGAUGAAGGAGCUUGCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------ ...((((.((((((.(..(((....(((((.(((((....).)))).))))).)))...).)))))((((((---------...))))))).))))......------------------ ( -33.20) >DroEre_CAF1 4958 93 + 1 ACCCUUAACGAGCUGCAAAUUCAAUGGUUCCAGGCCGGAAGUGCCUUGAAUCUCAUGAAGGAGCUGUCCGCC---------AAGGGUGGCGAUAAGAAAUAG------------------ ((((((..((..(.((...((((..(((((.(((((....).)))).)))))...))))...)).)..))..---------))))))...............------------------ ( -32.00) >DroAna_CAF1 3331 114 + 1 ACGCUCAAUGACCUGCAAAUCCAAUGGUUCAAGGCUGGCAGUGCUCUGAAUCUCAUGAAGGAGCUGGCCGGCGGA------AAAGGUGGCGAUGCCAAGAAGGGUGACGAUACUAAGAAG .(((((....((((.....(((..((...))..((((((...(((((...((....)).)))))..)))))))))------..))))(((...))).....))))).............. ( -34.00) >DroPer_CAF1 31172 102 + 1 UCGUUUAACGAUCUCCAGAUCAAGUGGUUCCAAGCUGGCAGUGCCUUGAAUCUGAUGAAGGAACUGGCCUCCGGUGGGGGCAAGGGUGACGGCAAGGG------------------CAAG ..((((...((((....))))..((.(((((.......((((.((((.(......).)))).))))((((((...))))))...)).))).))..)))------------------)... ( -30.40) >consensus ACCCUUAACGAGCUGCAGAUCCAGUGGUUCCAGGCCGGAAGUGCCUUGAAUCUGAUGAAGGAGCUGGCCGCC_________AAGGGUGGCGAUAAGAAAUAG__________________ ...((((.(.((((.(...((....(((((.(((((....).)))).)))))....)).).)))).((((((............))))))).))))........................ (-16.84 = -17.73 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:42 2006