Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,959,153 – 6,959,251 |
Length | 98 |
Max. P | 0.590504 |
Location | 6,959,153 – 6,959,251 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 92.41 |
Mean single sequence MFE | -24.18 |
Consensus MFE | -18.22 |
Energy contribution | -18.66 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -1.74 |
Structure conservation index | 0.75 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.590504 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6959153 98 + 27905053 CCAAUGGAAUUGGCUUCGUUGAGUGAUGAAGGCGGCGGCGGUGGCGGGGACGGAAAGGUAAAUAAAGAAAAGAGCUAAGCUACACUGCAAACAAAAAC .........(((.(((((((....))))))).)))..((((((.((....))....................(((...))).)))))).......... ( -23.10) >DroSec_CAF1 8348 95 + 1 CCAAUAGAAUUGGCUUCGUUGAGUGAUGAAGGCG---GCGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAAAAAC (((((...)))))(((((((....)))))))(((---(..(((((...(((......((......))......)))..))))).)))).......... ( -24.90) >DroSim_CAF1 8392 95 + 1 CCAAUGGAAUUGGCUUCGUUGAGUGAUGAAGGCG---GCGGUGGCGCUGGCGGAAAGGUUAAUAAACAAAAGAGCUAAGCUACACUGCAAACAAAAAC ..........((.(((((((....))))))).))---((((((..((((((......(((....)))......))).)))..)))))).......... ( -26.80) >DroEre_CAF1 6696 95 + 1 CCAGUGGAAUUGGCUGAGUUGAGUGAUAAAGGCG---GUGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAGAAAC .((((.......))))...............(((---(((.((((...(((......((......))......)))..)))))))))).......... ( -21.80) >DroYak_CAF1 9351 95 + 1 CCAAUAGAAUUGGCUUUGUUGAGUGAUGAAGGCG---GUGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAGAAGC (((((...)))))(((..((....))..)))(((---(((.((((...(((......((......))......)))..)))))))))).......... ( -24.30) >consensus CCAAUGGAAUUGGCUUCGUUGAGUGAUGAAGGCG___GCGGUGGCGCGGGCGGAAAGGUAAAUAAACAAAAGAGCUAAGCUACACUGCAAACAAAAAC ...........(.(((((((....))))))).)....((((((((...(((......((......))......)))..))..)))))).......... (-18.22 = -18.66 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:39 2006