Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,956,366 – 6,956,464 |
Length | 98 |
Max. P | 0.678383 |
Location | 6,956,366 – 6,956,464 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 86.62 |
Mean single sequence MFE | -30.02 |
Consensus MFE | -23.38 |
Energy contribution | -23.55 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.29 |
Mean z-score | -2.41 |
Structure conservation index | 0.78 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6956366 98 - 27905053 -CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUAUGGCAGCUGUUGCUAUUCGUUGUUCG -....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -28.20) >DroSec_CAF1 5593 98 - 1 -CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUGUGGCAGCUGUUGCUACUCGUUGUUCG -....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -30.00) >DroSim_CAF1 5619 98 - 1 -CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUGUGGCAGCUGUUGCUACUCGUUGUUCG -....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -30.00) >DroEre_CAF1 3943 98 - 1 -CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCCAUGUGGCAGCUGUUGCCACUCGUUGUUCG -....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -32.30) >DroWil_CAF1 1925 98 - 1 UCGCUCUUGCUUUUUGUGAGUGUGUGGCAAAUGUUUGCUGCAAAUAAAUUGCAUUUGCGCUUUAAAUGUCCUCCAUGUGGCAGCUGUUGCAGUGAG-----UG .(((...(((..(((((.....((..((((....))))..)).)))))..)))...)))...........(((..((..((....))..))..)))-----.. ( -27.30) >DroYak_CAF1 6526 98 - 1 -CAUUGUUGCAUA----GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAACAUCGUCAAUGUGGCAGCUGUUGCCACUCGUUGUUCG -....(((((((.----....)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. ( -32.30) >consensus _CAUUGUUGCAUA____GUUCGUGCAGCAAGUGCUUGUUGCAAAUAAAUUGCAUUUGCACUUAAAGCAUCGUCAAUGUGGCAGCUGUUGCUACUCGUUGUUCG .....(((((((.........)))))))((((((....(((((.....)))))...))))))..((((.((.....(((((((...))))))).)).)))).. (-23.38 = -23.55 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:36 2006