Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,956,196 – 6,956,316 |
Length | 120 |
Max. P | 0.500000 |
Location | 6,956,196 – 6,956,316 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.25 |
Mean single sequence MFE | -22.60 |
Consensus MFE | -19.42 |
Energy contribution | -19.46 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.04 |
Mean z-score | -1.19 |
Structure conservation index | 0.86 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6956196 120 + 27905053 UUUGUGCACUAAAUGCUCUUGGCCUUUAUUCGACUCGACUCGUCUCGUCUCGUCAGUAGAAAAGCCUGAACAACAUUAAUCAGGCUUACCUUGUCGUGUAUUUUUCCCCACCUACAAACA ...(((....((((((...((((.((((((.(((..(((.......)))..))))))))).((((((((..........)))))))).....)))).)))))).....)))......... ( -26.00) >DroSec_CAF1 5435 110 + 1 UUUGUGCACUAAAUGCUCUUGGCCUUUAUUCGACU-----CGU-----CUCGUCAGUAGAAAAGCCUGAAAAACAUUAAUCUGGCUUACCUUGUCGUGUAUUUUUCCCCACCUACAAACA ...(((....((((((...((((.((((((.(((.-----...-----...))))))))).(((((.((..........)).))))).....)))).)))))).....)))......... ( -18.20) >DroSim_CAF1 5456 115 + 1 UUUGUGCACUAAAUGCUCUUGGCCUUUAUUCGACU-----CGUCUCGUCUCGUCAGUAGAAAAGCCUGAACAACAUUAAUCAGGCUUACCUUGUCGUGUAUUUUUCCCCACCUACAAACA ...(((....((((((...((((.((((((.(((.-----...........))))))))).((((((((..........)))))))).....)))).)))))).....)))......... ( -22.00) >DroEre_CAF1 3785 110 + 1 UUUGUGCACUAAAUGCUCUUGGCCUUUAUUCGACU-----GGU-----CUCGUCAGUGGAAAAGCCUGAACAACAUUAAUCAGGCUUACCUUGUCGUGUAUUUUUCCCAACCUACAAACA ...((((((((((.((.....)).))))(((.(((-----((.-----....))))).)))((((((((..........))))))))........))))))................... ( -25.50) >DroYak_CAF1 6368 110 + 1 UUUAUGCACUAAAUGCUCUUGGCCUUUAUUCGACU-----CGU-----CUCGUCAGUGGAAAAGCCUGAACAACAUUAAUCAGGCUUACCUUGUCGUGUAUUUUUCCCAACCUACAAACA ...((((((((((.((.....)).)))).......-----...-----...(.(((.((..((((((((..........)))))))).))))).)))))))................... ( -21.30) >consensus UUUGUGCACUAAAUGCUCUUGGCCUUUAUUCGACU_____CGU_____CUCGUCAGUAGAAAAGCCUGAACAACAUUAAUCAGGCUUACCUUGUCGUGUAUUUUUCCCCACCUACAAACA ...((((((((((.((.....)).))))...(((...............((.......)).((((((((..........)))))))).....)))))))))................... (-19.42 = -19.46 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:35 2006