Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,955,588 – 6,955,682 |
Length | 94 |
Max. P | 0.985651 |
Location | 6,955,588 – 6,955,682 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 75.91 |
Mean single sequence MFE | -19.70 |
Consensus MFE | -10.80 |
Energy contribution | -11.67 |
Covariance contribution | 0.86 |
Combinations/Pair | 1.16 |
Mean z-score | -2.53 |
Structure conservation index | 0.55 |
SVM decision value | 2.01 |
SVM RNA-class probability | 0.985651 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6955588 94 + 27905053 UCGCCUUGCAACUUGAUUCAAUUAAGUUUCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAAAAAAAGGCCACAAGGC-----------CCACCUCUUUUUC------ ..((((((.((((((((...)))))))).(((.((((((((.........)))--))))--)...........)))...))))))-----------.............------ ( -14.70) >DroVir_CAF1 79859 103 + 1 CUGCCCGGUAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUUACCACAAAAAA--GUA-CAAAUAUAA--AUAAA--UACAGAA-----AAAGUAUGCCCCCGUUUUUUUUUUUU ......(((((((((((...)))))))))))....(((((.(((.........--)))-.)))))...--.....--...((((-----((((.(((....))).)))))))).. ( -14.70) >DroSec_CAF1 4804 93 + 1 UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAA-AAAAGGCCACAAGGC-----------CCACCCGUCUUCC------ ..(((((((((((((((...))))))))))...((((((((.........)))--))))--).......-..)))))...(((((-----------......)))))..------ ( -20.60) >DroSim_CAF1 4830 92 + 1 UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAA--AAAGGCCACAAGGC-----------CCAACUCUUUUCC------ ..((((((.((((((((...))))))))((((.((((((((.........)))--))))--).......--..))))..))))))-----------.............------ ( -19.20) >DroEre_CAF1 3136 105 + 1 UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUAAAAAAAAAAGUGA--UACCUAA--AAAAGGCCAAAAGGCUGGCGAAAUAACCACCUCUUUUUU------ (((((..((((((((((...))))))))))...((((((((...........)))))))--)......--....((((....)))))))))..................------ ( -24.50) >DroYak_CAF1 5690 105 + 1 UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA--AUGA--UACCAAAUAAAAAGGGCACAGAGCUGGCGAAAUAUCCACCUCUUUUUU------ ..(((((((((((((((...))))))))))...((((((((.........)))--))))--)...........)))))..((((.(((........))).)))).....------ ( -24.50) >consensus UCGCCUUGCAACUUGAUUCAAUUAAGUUGCCUGAUUAUUUUAGCUACAAAAAA__AUGA__UACCAAAA_AAAAGGCCACAAGGC___________CCACCUCUUUUUC______ ..(((((((((((((((...))))))))))((((.....)))).....................................))))).............................. (-10.80 = -11.67 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:34 2006