Locus 2568

Sequence ID 3R_DroMel_CAF1
Location 6,955,229 – 6,955,334
Length 105
Max. P 0.543346
window4193

overview

Window 3

Location 6,955,229 – 6,955,334
Length 105
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 84.62
Mean single sequence MFE -39.82
Consensus MFE -27.14
Energy contribution -28.06
Covariance contribution 0.92
Combinations/Pair 1.08
Mean z-score -1.69
Structure conservation index 0.68
SVM decision value 0.02
SVM RNA-class probability 0.543346
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 6955229 105 - 27905053
UG------GUCCUGGUCCUGGUCCUGCUGGGUUACAAAGGAGUUCCAUCGUGGGGUUUCGGAAGCUCGGAAGGGUCCAACUG-GCGGACAUUCCGUCAGAAGCCCACAAUAA
((------(((((...((..(.....)..))......))))...)))..(((((.((..((..((((....))))))..(((-((((.....))))))))).)))))..... ( -40.80)
>DroSec_CAF1 4451 106 - 1
UG------GUCCUGCUCCUGCUCCUGGUGGGUUACAAAGGAGUUCCAUCGUGGGGUUUCGGGAGCUAGGAAGGGUCCAACUGGGCGGACAUUCCGUCAGAAGCCCACAAUAA
((------(.(((..((((((((((..((.....))..((((..((.....))..)))))))))).)))).))).)))..(((((.(((.....)))....)))))...... ( -43.90)
>DroSim_CAF1 4469 112 - 1
UGGUCCUGGUCCUGCUCCUGCUCCUGGUGGGUUACAAAGGAGUUCCAUCGUGGGGUUUCGGAAGCUCGGAAGGGUCCAACUGGGCGGACAUUCCGUCAGAAGCCCACAAUAA
(((.(((..(((.(((((.((((((((((((..((......))))))))).)))))...)).)))..))).))).)))..(((((.(((.....)))....)))))...... ( -43.60)
>DroEre_CAF1 2783 93 - 1
UGGUC------------------CUGGUUGGUUAUAAAGGAGUUCCACUGUGGGGUUUCGGAGUUUCGGAAAGGUCCAACUG-GCGGACAUUCCGUCAGAAGCCCACAAUAA
(((((------------------((............))))...))).((((((.((..(((.(((....))).)))..(((-((((.....))))))))).)))))).... ( -31.10)
>DroYak_CAF1 5334 111 - 1
UGGUCCUGAACCUGGUCCUGUUCCUGGUUGGUUACAAAGGAGUUCCACUGUGGGGUUUCGGAAGGUCGGAAGGGUCCAACUG-GCGGACAUUCCGUCAGAAGCCCACAAUAA
(((((((.((((....((.......))..))))....))))...))).((((((.((..(((...((....)).)))..(((-((((.....))))))))).)))))).... ( -39.70)
>consensus
UGGUC___GUCCUGCUCCUGCUCCUGGUGGGUUACAAAGGAGUUCCAUCGUGGGGUUUCGGAAGCUCGGAAGGGUCCAACUG_GCGGACAUUCCGUCAGAAGCCCACAAUAA
..........................(((((((.....((((..((.....))..))))(((..(((....))))))..(((.((((.....))))))).)))))))..... (-27.14 = -28.06 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:33 2006