Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,953,641 – 6,953,748 |
Length | 107 |
Max. P | 0.986594 |
Location | 6,953,641 – 6,953,748 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 76.81 |
Mean single sequence MFE | -27.72 |
Consensus MFE | -17.19 |
Energy contribution | -18.08 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.35 |
Mean z-score | -2.58 |
Structure conservation index | 0.62 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986594 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6953641 107 - 27905053 AUAAAUCUAUUUGCUCGCAGAGAUGAUGAGUUUGCUGAAUGUGCCACUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUAAACAAAUUCAUCGAUGUAACUA ....(((..((((....))))...((((((((((...((((((((((....))))).(((......)))..........)))))...)))))))))))))....... ( -27.90) >DroVir_CAF1 77099 104 - 1 AUCAA---UUUCAUUUUCAGACAUGCUUAAUGCGAUGAUUGCGCCUUCUUUUUGGCAGAAACAUAAGACUUUCAGUUGGAUGUUGGAAGUUAUCGCCGAAUGCGUAU .....---..............((((.....(((((((((.((((........)))...(((((..(((.....)))..))))).).))))))))).....)))).. ( -25.30) >DroSec_CAF1 2855 107 - 1 AUAAAUCUUUUUGUCUACAGAAAUGAUGACGUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUAGAUUACAUAUUAAACAAAUUCAUCGAUACAACAA ....(((((((((....)))))).(((((..(((...((((((......((((((((.........))))))))....))))))...)))..))))))))....... ( -23.00) >DroSim_CAF1 2849 107 - 1 AUAAAUCUUUUUGUCUACAGAGAUGAUGAGUUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUAGAUUACAUAUUAAACAAAUUCAUCGAUACAACAA ....(((((((((....)))))).((((((((((...((((((......((((((((.........))))))))....))))))...)))))))))))))....... ( -28.20) >DroEre_CAF1 1222 107 - 1 AUAAAUCUGUUUACCCACAGAGAUGAUGAAUUUGCUAAAUGUGCCACUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUGGACAAAUUCAUCGAGACUACAC .....(((((......)))))..((((((((((((((((((((((((....))))).(((......)))........)))).)))).)))))))))))......... ( -33.20) >DroYak_CAF1 2871 105 - 1 AUAAAUC--UUUACCCACAGAGAUGAUGAGUUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUGGACAAAUUCAUCGAGACUACAC ....(((--(((......))))))(((((((((((..((((((..(((...((((((.........))))))))).))))).)..).)))))))))).......... ( -28.70) >consensus AUAAAUCUUUUUACCCACAGAGAUGAUGAGUUUGCUGAAUGUGCCUCUAUUGUGGCAGCAGCUCAAUGCCAUGGAUUACAUAUUAAACAAAUUCAUCGAUACAACAA .......................(((((((((((.(.((((((......((((((((.........))))))))....)))))).).)))))))))))......... (-17.19 = -18.08 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:31 2006