Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,936,449 – 6,936,557 |
Length | 108 |
Max. P | 0.657138 |
Location | 6,936,449 – 6,936,557 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 93.51 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -26.62 |
Energy contribution | -28.34 |
Covariance contribution | 1.72 |
Combinations/Pair | 1.06 |
Mean z-score | -1.58 |
Structure conservation index | 0.79 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6936449 108 - 27905053 AAAUGGAA-AAAGGAAAAGGGAGCUGGCUGGUCCUGGUGGUCCUGCUGUUCCU---GUUAC------UGUUCCUGCUGUUUAUAUAGCCUGGUCUACGUGUAUAAAUAACGGUAACAU ........-.........((((((.(((.((.((....)).)).)))))))))---(((((------((((((.(((((....)))))..))...............))))))))).. ( -31.96) >DroSec_CAF1 85103 114 - 1 AAAUGGAA-AAAGGAAAAGGGAGCUGGUUGGUCCUGUUGGUCCUGCUGUUCCU---GUUACUGUUGCUGUUCCUGCUGUUUAUAUAGCCUGGUCUACGUGUAUAAAUAACGGUAACAU ....((((-..((((...((((.(.....).)))).....))))....))))(---((((((((((((((.((.(((((....)))))..))...))).)))......))))))))). ( -33.80) >DroSim_CAF1 86392 115 - 1 AAAUGAAAAAAAGGAAAACGGAGCUGGUUGGUCCUGUUGGUCCUGCUGUUCCU---GUUACUGUUACUGUUCCCGCUGUUUAUAUAGCCUGGUCUACGUGUAUAAAUAACGGUAACAU ...................(((((.(((.((.((....)).)).))))))))(---((((((((((((((.((.(((((....)))))..))...))).)))......))))))))). ( -31.90) >DroEre_CAF1 86989 114 - 1 AAAUGGAA-AAAGGAAAAGGGAGCUGGUUGGUCCUGUUGGUCCUGCUGUUCCU---GUUACUGUUACUGUUCCUGCUGUUUAUAUAGCCUGGUCUACGUGUAUAAAUAACGGUAACAU ....((((-..((((...((((.(.....).)))).....))))....))))(---((((((((((((((.((.(((((....)))))..))...))).)))......))))))))). ( -33.80) >DroYak_CAF1 87088 117 - 1 AAAUGGAA-AAAGGAAAAGGGCGCUGGUUGGUCCUGUUGGUCCUGCUGGUCCUGCUGUUCCUGUUACUGUUCCUGCUGUUUAUAUAGCCUGGUCUACGUGUAUAAAUAACGGUAACAU ........-..(((((..(((.((..((.((.((....)).)).))..)))))....)))))(((((((((((.(((((....)))))..))...............))))))))).. ( -36.06) >consensus AAAUGGAA_AAAGGAAAAGGGAGCUGGUUGGUCCUGUUGGUCCUGCUGUUCCU___GUUACUGUUACUGUUCCUGCUGUUUAUAUAGCCUGGUCUACGUGUAUAAAUAACGGUAACAU ..................((((((.(((.((.((....)).)).)))))))))...((((((((((((((.((.(((((....)))))..))...))).)))......)))))))).. (-26.62 = -28.34 + 1.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:22 2006