Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,936,102 – 6,936,215 |
Length | 113 |
Max. P | 0.997383 |
Location | 6,936,102 – 6,936,215 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 93.91 |
Mean single sequence MFE | -25.67 |
Consensus MFE | -24.96 |
Energy contribution | -24.96 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.49 |
Structure conservation index | 0.97 |
SVM decision value | 2.85 |
SVM RNA-class probability | 0.997383 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6936102 113 - 27905053 ACCGCAAAAAAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUG-----CCCCUUCCCCUUUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ...(((.............((((((((((((....)))))))))))).(((....)))........))-----)............((((.....(((...))).....))))..... ( -26.30) >DroSec_CAF1 84767 112 - 1 ACCGCAAA-AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUA-----CCCCUUCCCCUCUCACGUUCACGACCAUGUCCAUUCCGUGUCUCC ..(((...-..........((((((((((((....))))))))))))(((((..(((...........-----......................)))...)))))....)))..... ( -25.11) >DroSim_CAF1 86059 112 - 1 ACCGCAAA-AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUA-----CCCCUGCCCCUCUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ...(((..-..........((((((((((((....)))))))))))).(((....)))..........-----....)))......((((.....(((...))).....))))..... ( -26.30) >DroEre_CAF1 86640 117 - 1 ACCGCAAA-AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUCUCCUCCCAUUCCCAUUCCCCUUUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ..(((...-..........((((((((((((....))))))))))))(((((..(((......................................)))...)))))....)))..... ( -24.96) >consensus ACCGCAAA_AAAUUUCAUCGCUCAUACAUAUCCGAGUAUGUGUGAGCUGGACUUGUCCUUUUUCCCUA_____CCCCUUCCCCUCUCACGUUCACGACCAUGUCCAUUUCGUGUCUCC ..(((..............((((((((((((....))))))))))))(((((..(((......................................)))...)))))....)))..... (-24.96 = -24.96 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:21 2006