Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 996,406 – 996,500 |
Length | 94 |
Max. P | 0.576543 |
Location | 996,406 – 996,500 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 78.97 |
Mean single sequence MFE | -23.22 |
Consensus MFE | -16.77 |
Energy contribution | -17.83 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.15 |
Mean z-score | -1.07 |
Structure conservation index | 0.72 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.576543 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 996406 94 - 27905053 AGGAGAGGAGGAGUCCAAGGUGUGCGAACCUGGAAUGUGGGCCAGCUUUGGC---AGGGGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG .((...(((((..((((.(((......))))))).....((((((.(((((.---........))))).))))))......))))).))........ ( -27.20) >DroSec_CAF1 41287 78 - 1 ----------------AAGGUGUGCGAACCUGAAAUGUGGGCCAGCUUUGGC---AGGGGGAAUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ----------------((((((((((((...........((((((.(((((.---........))))).))))))........)))).)))))))). ( -23.21) >DroSim_CAF1 43661 78 - 1 ----------------AAGGUGUGCGAACCUGAAAUGUGGGCCAGCUUUGGC---AGGGGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ----------------((((((((((((...........((((((.(((((.---........))))).))))))........)))).)))))))). ( -23.31) >DroEre_CAF1 43559 78 - 1 ----------------AAGGUGUGGGAGCUUGAAAUGUGGGCCAGCUUGGGC---AAAAGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ----------------(((((((((.....(((((.((.((((.((....))---..(((........))))))).....)))))))))))))))). ( -23.40) >DroWil_CAF1 48280 78 - 1 ----------------AU---GGAAAAGAUGAAAAUGUGGGCCAACUUCUGUUGAAAGGAAAUUCAAACUUGGCCAUAAAACUUUUGCCACAGCUUC ----------------.(---(((((((((....))...((((((......(((((......)))))..))))))......))))).)))....... ( -16.40) >DroYak_CAF1 45895 78 - 1 ----------------AAGGUGUGCGAACUUGAAAUGUGGGCCAGCUUUGGC---CGGAGGAUUCAAACUUGGCCACAAAACUUUCGCCGCAUCUUG ----------------((((((((((((.......(((((.((((.((((.(---(...))...)))).))))))))).....)))).)))))))). ( -25.80) >consensus ________________AAGGUGUGCGAACCUGAAAUGUGGGCCAGCUUUGGC___AGGGGGAUUCAAACUUGGCCAUAAAACUUUCGCCGCAUCUUG ................((((((((((((.......(((((.((((.(((((............))))).))))))))).....)))).)))))))). (-16.77 = -17.83 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:46 2006