Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,933,668 – 6,933,768 |
Length | 100 |
Max. P | 0.554851 |
Location | 6,933,668 – 6,933,768 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 99.40 |
Mean single sequence MFE | -25.40 |
Consensus MFE | -25.64 |
Energy contribution | -25.40 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.20 |
Structure conservation index | 1.01 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554851 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6933668 100 - 27905053 GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU ((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -26.20) >DroSec_CAF1 82307 100 - 1 GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU ((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -26.20) >DroSim_CAF1 83602 100 - 1 GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU ((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -26.20) >DroEre_CAF1 84166 100 - 1 GUAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU ((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -24.20) >DroYak_CAF1 84273 100 - 1 GUAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU ((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. ( -24.20) >consensus GCAGUUGUAGUUGUUGCUACUGUACUUUACACAGUUGUUUGGCUGCUUUUUGCACGCUCUUAAGCAUCGCGCGGGCAUGAAACUUACUUCAUUUGCGUUU ((((..(((((((..((.(((((.......))))).)).)))))))...))))..(((....)))...((((((..(((((......))))))))))).. (-25.64 = -25.40 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:15 2006