Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,931,067 – 6,931,158 |
Length | 91 |
Max. P | 0.946501 |
Location | 6,931,067 – 6,931,158 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 90.11 |
Mean single sequence MFE | -33.20 |
Consensus MFE | -29.50 |
Energy contribution | -29.83 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.64 |
Structure conservation index | 0.89 |
SVM decision value | 1.36 |
SVM RNA-class probability | 0.946501 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6931067 91 + 27905053 GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGCGCAUAAAUCGGUUGGCAUUGAUGACAGCCAGGCUGGCAGGCUGGCAACCAGGG ...((((((((.....((((((((..((((((.((...)))))))).)))))))).))))))))(((((.(.....).)))))........ ( -33.70) >DroSec_CAF1 79720 91 + 1 GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGCGCAUAAAUCGGUUGGCAUUGAUGACAGCCUGGCUGGCAGGCUGGCAAGCAGGG ..(((((((((.....((((((((..((((((.((...)))))))).)))))))).)))))))))((((((..(....)..))...)))). ( -35.50) >DroEre_CAF1 81622 82 + 1 GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGAGCAUAAAUCGGUUGGCAUUGAUGACAGGCAGGCUGGCUGGCUGG--------- ..(((((((((.....((((((((..((((((.((...)))))))).)))))))).))))))))).(((.(.....).))).--------- ( -30.40) >consensus GACUGUCGUCAUAAUUUGUCGGCCAAGUUUAUUGCAGCGCAUAAAUCGGUUGGCAUUGAUGACAGCCAGGCUGGCAGGCUGGCAA_CAGGG ..(((((((((.....((((((((..((((((.((...)))))))).)))))))).)))))))))....((..(....)..))........ (-29.50 = -29.83 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:09 2006