Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,930,198 – 6,930,306 |
Length | 108 |
Max. P | 0.885018 |
Location | 6,930,198 – 6,930,306 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 95.18 |
Mean single sequence MFE | -29.06 |
Consensus MFE | -26.62 |
Energy contribution | -26.90 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.07 |
Mean z-score | -1.37 |
Structure conservation index | 0.92 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.885018 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6930198 108 + 27905053 AGUGUGCUUCUUUUGUGGUCCUCGCUAGCUGGUGUCAUAUUCCCCCAGACUUAUCCGAAUGUGACUUGGACCAGCUUGCUUAUCUUUAUGACGGCGCAUAACUAAAUG .(((((((((......(((....((.((((((((((((((((..............)))))))))....))))))).))..))).....)).)))))))......... ( -31.04) >DroSec_CAF1 78919 108 + 1 AGUGUGCUUCUUUUGUGGUCCUCGUAAGCUGGUGUCAUUUUACCCCAGACUUAUCCGAAUGUGACUUGGACCAGCUUGCUUAUCUUUAUGAAGGCGCAUAACUAAAUG .(((((((...((..(((.....((((((((((.(((..((((....(.......)....))))..)))))))))))))......)))..)))))))))......... ( -29.20) >DroSim_CAF1 80143 108 + 1 AGUGUGCUUCUUUUGUGGUCUUCGUAAGCUGGUGUCAUUUUACCCCAGACUUAUCCGAAUGUGACUUGGACCAGCUUGCUUAUCUUUAUGACGGCGCAUAACUAAAUG .(((((((((......(((....((((((((((.(((..((((....(.......)....))))..)))))))))))))..))).....)).)))))))......... ( -28.30) >DroEre_CAF1 80767 107 + 1 AGUGUCCCUCUUUUGUGGUUCUGGUAAGCUGGUGUCAUUUU-CCCCAGACUUAUCCGAAUGUGACUUGGACCAGCUUGCUUAUCUUUAUGACGGCGCAUAACUAAAUG .(((.((.((......(((...((((((((((((((((.((-(.............))).)))))....))))))))))).))).....)).)))))........... ( -29.92) >DroYak_CAF1 80835 107 + 1 AGUGUGCUUCUUUUGCGGUCCUCCUAAGCUGGUGUCAUUUU-CCCCAGACUUAUCCGAAUGUGACUUGGACCAGCUUGCUUAUCUUUAUGACGGCGCAUAACUAAAUG .(((((((((......((....))((((((((((((((.((-(.............))).)))))....)))))))))...........)).)))))))......... ( -26.82) >consensus AGUGUGCUUCUUUUGUGGUCCUCGUAAGCUGGUGUCAUUUU_CCCCAGACUUAUCCGAAUGUGACUUGGACCAGCUUGCUUAUCUUUAUGACGGCGCAUAACUAAAUG .(((((((((......(((....(((((((((((((...........)))....((((.......))))))))))))))..))).....)).)))))))......... (-26.62 = -26.90 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:08 2006