Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,927,152 – 6,927,272 |
Length | 120 |
Max. P | 0.966144 |
Location | 6,927,152 – 6,927,272 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 73.87 |
Mean single sequence MFE | -34.30 |
Consensus MFE | -13.46 |
Energy contribution | -14.48 |
Covariance contribution | 1.02 |
Combinations/Pair | 1.10 |
Mean z-score | -2.19 |
Structure conservation index | 0.39 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6927152 120 - 27905053 GGCAACAGAAUUCCCUUAAAACAUAUCAAACAGAUGUGGUCUUGAGUGUUGUCCUGAGCUUUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGGUGGUGGGAUGCCGUUGAU ((((.....((((((((....((((((.....)))))).........(((((((((((.......))))).).)))))....)))))))).((((((......)))))).))))...... ( -37.90) >DroSec_CAF1 75895 116 - 1 GGCAACAUAAUUCCCAUAACACAUAUCAAACAACUGUGGUCUUGAG--UUGUCCUGAU--UUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGAUGGUGGGAUGCCGUUGAU ((((.....((((((....((((...........)))).((((.((--(((((((((.--......)))).).)))))))))).)))))).((((((......)))))).))))...... ( -36.30) >DroSim_CAF1 77066 116 - 1 GGCAACAUAAUUCCCAUAACACAUACCAAACAAAUGUAGUUUUGAG--UUGUCCUGAG--UUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGAUGGUGGGAUGCCGUUGAU ((((.....((((((.....((((.........))))..((((.((--((((((((((--.....))))).).)))))).)))))))))).((((((......)))))).))))...... ( -36.20) >DroEre_CAF1 77840 94 - 1 GGCUCCAGAG-UCCCAUAGGAAAUAUUAAACCAUAGUUUAGUACAA--UUUCCCUGAC--UUUUUCUCAGUGUGCGGCUGGGAUAGGAA---------------------UGGCGUUGAU (((.(((...-(((....(((((((((((((....))))))))...--))))).....--....(((((((.....)))))))..))).---------------------))).)))... ( -24.80) >DroYak_CAF1 77786 112 - 1 AG---CAGAA-UCCCAUAAGAGCUAUUAAACAAUAAAUUAGGUAAA--UUUUCCUGAG--UUUUUCUCAGUGUGCAGCUGGGAAAGGAAUAGCUACUGACGAUGGUGGGAUGGCGAUGAU .(---(...(-((((((.(((((((((..........(((((....--....))))).--(((((((((((.....)))))))))))))))))).)).......))))))).))...... ( -36.30) >consensus GGCAACAGAAUUCCCAUAACACAUAUCAAACAAAUGUGGUCUUGAG__UUGUCCUGAG__UUUUUUUCAGUGUGCAGCUGGGAAGGGAAUACCUACUGACGAUGGUGGGAUGCCGUUGAU (((.........................................................(((((((((((.....)))))))))))....((((((......))))))..)))...... (-13.46 = -14.48 + 1.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:39:06 2006