Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 992,900 – 993,006 |
Length | 106 |
Max. P | 0.518796 |
Location | 992,900 – 993,006 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 75.66 |
Mean single sequence MFE | -36.13 |
Consensus MFE | -21.64 |
Energy contribution | -20.56 |
Covariance contribution | -1.08 |
Combinations/Pair | 1.37 |
Mean z-score | -1.33 |
Structure conservation index | 0.60 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.518796 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 992900 106 + 27905053 CUCUGGUGCGCAAGAUUCACUCCGGCAACUACACGUGUGAGCCGGAAAACAGUGCGGCAGCUUCUAUGCAGUUGCACGUCCUGAGCGGUAGGUGA----CACUAAUUAUU----- .((((.(((.((.(((....((((((.((.......))..)))))).....(((((((.((......)).)))))))))).)).))).))))...----...........----- ( -34.80) >DroPse_CAF1 50609 111 + 1 CGCUGGUGCGCAAGAUCCACUCCGGCAAUUAUACCUGCGAGCCGGAGAACAGUGCAGCGGUGUCCAUGCAGCUGCACGUGCUUAGCGGUAAGUGG----GAUUACUUAGCAUAAU .(((((.((((........(((((((..............)))))))....(((((((.((......)).))))))))))))))))(.((((((.----...)))))).)..... ( -44.64) >DroEre_CAF1 41758 111 + 1 CUCUGGUGCGCAAGAUCCACUCCGGCAACUACACGUGUGAGCCGGAAAACAGUGCGGCAGCUUCUAUGCAAUUGCACGUCCUCAGUGGUAGGUGA----CGCCAAUUAUUGCGGG ...((((((((.....((((((((((.((.......))..)))))).....((((((..((......))..)))))).......))))...))).----)))))........... ( -37.50) >DroMoj_CAF1 35992 106 + 1 CCAUAGUGCGUAAGAGCCAUUCCGGAAACUACACCUGCGAGCCGGAAAACAGUGAAGCAGUCUCCAUACAACUGCAUGUGCUUAGCGGUAAGCUA--UCAAUUACCUA------- .......((....((((((((((((...(.......)....)))))).........(((((.........))))).)).)))).))(((((....--....)))))..------- ( -24.00) >DroAna_CAF1 39914 108 + 1 CCUUAGUGCGGAAAAUACACUCCGGCAACUACACGUGCGAGCCGGAAAACAGUGCGGCCGUGUCCAUGCAACUGCAUGUCCUGAGCGGUAAGAACUAUCCCCUAACUA------- ..((((.(.(((........((((((.((.....))....))))))....(((...((((((..(((((....)))))..)...)))))....))).))))))))...------- ( -31.20) >DroPer_CAF1 50734 111 + 1 CGCUGGUGCGCAAGAUCCACUCCGGCAAUUAUACCUGCGAGCCGGAGAACAGUGCAGCGGUGUCCAUGCAGCUGCACGUGCUUAGCGGUAAGUGG----GAUUACUUAGCAUAAU .(((((.((((........(((((((..............)))))))....(((((((.((......)).))))))))))))))))(.((((((.----...)))))).)..... ( -44.64) >consensus CCCUGGUGCGCAAGAUCCACUCCGGCAACUACACCUGCGAGCCGGAAAACAGUGCAGCAGUGUCCAUGCAACUGCACGUCCUUAGCGGUAAGUGA____CACUAAUUA_______ ...((.(((...........((((((..............)))))).....((((((..((......))..)))))).......))).))......................... (-21.64 = -20.56 + -1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:45 2006