Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,918,596 – 6,918,688 |
Length | 92 |
Max. P | 0.990907 |
Location | 6,918,596 – 6,918,688 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.27 |
Mean single sequence MFE | -25.39 |
Consensus MFE | -15.90 |
Energy contribution | -17.26 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.94 |
Structure conservation index | 0.63 |
SVM decision value | 2.24 |
SVM RNA-class probability | 0.990907 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6918596 92 + 27905053 A-------------------GCUC--CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUAU .-------------------....--...(((((..(((((((((.((((((((....)))))))).----.....-...)))))))))...)))))..................... ( -22.80) >DroEre_CAF1 69095 92 + 1 U-------------------GCUC--CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUUU .-------------------....--...(((((..(((((((((.((((((((....)))))))).----.....-...)))))))))...)))))..................... ( -22.80) >DroWil_CAF1 79600 84 + 1 --------------------------CGCUGCCAUUGCAAAAUGUUGCUUAUAAAUUAUUAUGAGCCAUGGCCAUGCCACGCAUUUUG-------CAACAUUUAAUGGCACAAAAU-U --------------------------.(.((((((((((((((((.((((((((....))))))))..((((...)))).))))))))-------)).......))))))).....-. ( -28.11) >DroYak_CAF1 69023 92 + 1 A-------------------GCUA--CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUUU .-------------------....--...(((((..(((((((((.((((((((....)))))))).----.....-...)))))))))...)))))..................... ( -22.80) >DroMoj_CAF1 74668 83 + 1 --------------------GCCGCACGCUGCCAUUGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC------ACG-CACGCAUUUUG-------CAACAUUAAAUGGCACUAAAU-U --------------------(((((.....))..(((((((((((.((((((((....)))))))).------...-...))))))))-------)))........))).......-. ( -23.30) >DroAna_CAF1 65196 113 + 1 AGUACCAGUAGAGGCAGGCUGCUCCGCUCUGCCAUGGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC----CCAUG-CACGCAUUUUGCAUUUGGCUACAUUUUAUGGCACCGAAAUU .(((((((....(((((((......)).)))))...(((((((((.((((((((....)))))))).----.....-...)))))))))..)))).)))................... ( -32.50) >consensus A___________________GCUC__CUAUGCCAUCGCAAAAUGUUGCUUAUGAAUUAUUAUGAGCC____CCAUG_CACGCAUUUUGCAUUUGGCAACAUUUUAUGGAACCGAAUUU .............................(((((..(((((((((.((((((((....))))))))..............)))))))))...)))))..................... (-15.90 = -17.26 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:59 2006