Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,915,058 – 6,915,174 |
Length | 116 |
Max. P | 0.999864 |
Location | 6,915,058 – 6,915,174 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.87 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -19.50 |
Energy contribution | -18.58 |
Covariance contribution | -0.92 |
Combinations/Pair | 1.35 |
Mean z-score | -5.39 |
Structure conservation index | 0.64 |
SVM decision value | 3.43 |
SVM RNA-class probability | 0.999193 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6915058 116 + 27905053 GAAAUUUGAACACAAU---UUGGAAGUGUGAA-AUAAUUAAACCAGAAUGUUAGUAUCAGACUAAGAUAUUAAUCUCUGGCCUAAUUAUUUCACUUUUCGAAUAACAAAUAAAUACAAAU ..............((---(((((((.(((((-(((((((..(((((..(((((((((.......))))))))).)))))..)))))))))))))))))))))................. ( -33.40) >DroSec_CAF1 63861 108 + 1 GAAAUUUGAACAGAAUUGUUUGGAAGAGUGGAUAUAAUU--ACCAGAAUGUUAGUAUCAGAAUAAGAUAUUAAUCUCUGUCCUAAUUAUUUCACUUUUUGAAUAACAAAU---------- ...............((((((.((((((((((.((((((--(.((((..(((((((((.......))))))))).))))...))))))))))))))))).)..)))))..---------- ( -25.80) >DroSim_CAF1 63212 109 + 1 GAAAUUUGAACAGAAUUGUUUGGAAGUGUGGA-AUAAUUAUACCAGAAUGUUAGUAUCAGACUAAGAUAUUAAUCUCUGGUCUAAUUAUUUCACUUUUUGAAUAACAAAU---------- ...............(((((..((((.(((((-(((((((.((((((..(((((((((.......))))))))).)))))).))))))))))))))))..))))).....---------- ( -35.80) >DroEre_CAF1 65626 115 + 1 GAAAUUUGGGCACAU----UUCUAAGAAUAGA-AUGAUUAUUCCAGAAGUUUAGUAUUAGACUAUGAUUCUUAUUUCUGGCCUAAUUAUUCCAUAUUUAGAAUAACAAAUAAAAACAAAU ...(((((.......----(((((((.((.((-(((((((..((((((((..((.((((.....)))).)).))))))))..))))))))).)).)))))))...))))).......... ( -27.00) >DroYak_CAF1 65439 106 + 1 G---------CACAU----UUCUAAAAAUAGA-AUGAUUGUACCAGAAGUUUAUUAUCAGACUAAGAUAAUAACUUCUGGCCUAAUUAUUCCAAUUUUAGAAUAACAAAUAAACACAUAU .---------.....----((((((((...((-(((((((..(((((((((.((((((.......)))))))))))))))..)))))))))...)))))))).................. ( -31.00) >consensus GAAAUUUGAACACAAU___UUGGAAGAGUGGA_AUAAUUAUACCAGAAUGUUAGUAUCAGACUAAGAUAUUAAUCUCUGGCCUAAUUAUUUCACUUUUAGAAUAACAAAUAAA_ACA_AU ...................((.((((.(((((.(((((((..(((((...((((((((.......))))))))..)))))..)))))))))))).)))).)).................. (-19.50 = -18.58 + -0.92)
Location | 6,915,058 – 6,915,174 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.87 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -12.98 |
Energy contribution | -14.38 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.19 |
Mean z-score | -3.42 |
Structure conservation index | 0.53 |
SVM decision value | 4.30 |
SVM RNA-class probability | 0.999864 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6915058 116 - 27905053 AUUUGUAUUUAUUUGUUAUUCGAAAAGUGAAAUAAUUAGGCCAGAGAUUAAUAUCUUAGUCUGAUACUAACAUUCUGGUUUAAUUAU-UUCACACUUCCAA---AUUGUGUUCAAAUUUC (((((.((..(((((......(((..((((((((((((((((((((.(((.((((.......)))).)))..)))))))))))))))-)))))..))))))---))...)).)))))... ( -31.60) >DroSec_CAF1 63861 108 - 1 ----------AUUUGUUAUUCAAAAAGUGAAAUAAUUAGGACAGAGAUUAAUAUCUUAUUCUGAUACUAACAUUCUGGU--AAUUAUAUCCACUCUUCCAAACAAUUCUGUUCAAAUUUC ----------..(((((........((((..(((((((...(((((.(((.((((.......)))).)))..))))).)--))))))...))))......)))))............... ( -13.84) >DroSim_CAF1 63212 109 - 1 ----------AUUUGUUAUUCAAAAAGUGAAAUAAUUAGACCAGAGAUUAAUAUCUUAGUCUGAUACUAACAUUCUGGUAUAAUUAU-UCCACACUUCCAAACAAUUCUGUUCAAAUUUC ----------(((((...........(((.((((((((.(((((((.(((.((((.......)))).)))..))))))).)))))))-).))).......((((....)))))))))... ( -22.10) >DroEre_CAF1 65626 115 - 1 AUUUGUUUUUAUUUGUUAUUCUAAAUAUGGAAUAAUUAGGCCAGAAAUAAGAAUCAUAGUCUAAUACUAAACUUCUGGAAUAAUCAU-UCUAUUCUUAGAA----AUGUGCCCAAAUUUC ..................((((((..(((((((.((((..((((((..........................))))))..)))).))-)))))..))))))----............... ( -20.87) >DroYak_CAF1 65439 106 - 1 AUAUGUGUUUAUUUGUUAUUCUAAAAUUGGAAUAAUUAGGCCAGAAGUUAUUAUCUUAGUCUGAUAAUAAACUUCUGGUACAAUCAU-UCUAUUUUUAGAA----AUGUG---------C ..................((((((((.((((((.(((..((((((((((((((((.......)))))).))))))))))..))).))-)))).))))))))----.....---------. ( -33.80) >consensus AU_UGU_UUUAUUUGUUAUUCAAAAAGUGAAAUAAUUAGGCCAGAGAUUAAUAUCUUAGUCUGAUACUAACAUUCUGGUAUAAUUAU_UCCACUCUUCCAA___AUUGUGUUCAAAUUUC ..........................((((((((((((.(((((((.(((.((((.......)))).)))..))))))).))))))).)))))........................... (-12.98 = -14.38 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:57 2006