Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,914,241 – 6,914,343 |
Length | 102 |
Max. P | 0.769600 |
Location | 6,914,241 – 6,914,343 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 81.83 |
Mean single sequence MFE | -21.08 |
Consensus MFE | -13.94 |
Energy contribution | -14.97 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.24 |
Mean z-score | -2.14 |
Structure conservation index | 0.66 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.769600 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6914241 102 - 27905053 GCUCCAGAUUUUCGAUAAUUAAAUACUUUAUACGAUUUCUCAAAUGAAGUUGUAUCAGUUCAUAUUGCCUUCGCUUGAAGACUUUCUUCGAUUUGGCAACGC ((......................(((..((((((((((......)))))))))).))).....(((((.....((((((.....))))))...))))).)) ( -21.20) >DroSec_CAF1 63051 102 - 1 UCUCCAGAUUUUCAAUAAUUAAAUACUUAAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUAUUGCCUUCGCUCGAAGACUUUCUUCCACUUGGCAACGC .............................((((((((((......)))))))))).........(((((.......((((.....)))).....)))))... ( -18.00) >DroSim_CAF1 62402 102 - 1 UCUCCAGAUUUUCAAUAAUUAAAUACUUAAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUAUUGCCUUCGCUUGAAGACUUUCUUCGACUUGGCAACGC .............................((((((((((......)))))))))).........(((((...(.((((((.....)))))))..)))))... ( -20.50) >DroEre_CAF1 64823 102 - 1 GCUCCAGCUUUUCAAUAAUUAAAUGCUUGAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAAUUUGCCUUUGCUUGAAGACUUUCUUUGACUUGGCGAUGC ((....))..................(((((((((((((......)))))))))))))......(((((...(.(..(((.....)))..))..)))))... ( -25.10) >DroWil_CAF1 74662 102 - 1 CUUCUAGAUCCUUGAUGAUCAAUUCCUUCAUCCGAUUUUUCAAUUGAAGCAAUUUUAAUUCCUCUUGGUUUUCCUUAAAGAUUCGUUUGCAUUUUGCAAGGC (((..((..((..((.((..((((.(((((...((....))...))))).)))).....)).))..)).....))..))).....(((((.....))))).. ( -13.60) >DroYak_CAF1 64631 102 - 1 GCUCGAGAUAUUCGAUAAUUAAAAGCUUGAUGCGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUUUUGCCUUUGCUUGAAGACCUUCUUCGAUUUGGCAAUGC ..(((((...))))).........(((((((((((((((......)))))))))))))......(((((.....((((((.....))))))...))))).)) ( -28.10) >consensus GCUCCAGAUUUUCAAUAAUUAAAUACUUAAUACGAUUUCUCAAAUGAAGUUGUAUCAAUUCAUAUUGCCUUCGCUUGAAGACUUUCUUCGACUUGGCAACGC .............................((((((((((......)))))))))).........(((((.....((((((.....))))))...)))))... (-13.94 = -14.97 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:55 2006