Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,912,029 – 6,912,127 |
Length | 98 |
Max. P | 0.768571 |
Location | 6,912,029 – 6,912,127 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -16.11 |
Consensus MFE | -13.58 |
Energy contribution | -13.30 |
Covariance contribution | -0.28 |
Combinations/Pair | 1.21 |
Mean z-score | -1.63 |
Structure conservation index | 0.84 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.768571 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6912029 98 - 27905053 ACCGCUCCGUCAGGUUGUAAUA-UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAACGAGCAGACAUUUUCGCUACUGCCCCCACCAAAGCCAUC ...((((.((..((((((....-(((((................)))))..))))))..))))))..........((....))................ ( -14.09) >DroSec_CAF1 60854 98 - 1 ACCGCUCCGUAAGGCAGUAAUA-UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAUUUUCGCUACUGCCCCCACCACAGCCAUC ...(((..((..(((((((...-.................((.......))........(((((........))))))))))))...))...))).... ( -18.80) >DroSim_CAF1 60216 98 - 1 ACCGCUCCGUCAGGCUGUAAUA-UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAUUUUCGCUACUGCCCCCACCACAGCCAUC ............((((((....-.................((.......)).(((...((((((........)))))).)))........))))))... ( -19.10) >DroEre_CAF1 62119 81 - 1 ACCGCUCCGUCAGGCUGUUAUAAUUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGUAGACAC------------------AACCACCCAA .(..(((.((..((((((......................((.......))))))))..)))))..)....------------------.......... ( -13.34) >DroYak_CAF1 62407 81 - 1 ACCGCUCCGUCAGGCUGUUAUAAUUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAC------------------AACCACCAGC ...((((.((..((((((......................((.......))))))))..))))))......------------------.......... ( -15.24) >consensus ACCGCUCCGUCAGGCUGUAAUA_UUUUUUUCCCCCAUUUCGCACAAAAAGCACAGCCAAGCGAGCAGACAUUUUCGCUACUGCCCCCACCACAGCCAUC ...((((.((..((((((......................((.......))))))))..)))))).................................. (-13.58 = -13.30 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:54 2006