Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 6,907,437 – 6,907,533 |
Length | 96 |
Max. P | 0.988392 |
Location | 6,907,437 – 6,907,533 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 75.45 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -24.45 |
Energy contribution | -24.53 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.16 |
Mean z-score | -2.36 |
Structure conservation index | 0.74 |
SVM decision value | 2.12 |
SVM RNA-class probability | 0.988392 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 6907437 96 + 27905053 UGUGUGUGCCUCGGGUUUUUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAAAAAUACAUAUUCUUGGGCAAUAGGUGGGAAG ((.(((((((((((((.........(((((....))))).)))))))).))))).))..((((.......((......)).......))))..... ( -32.84) >DroSec_CAF1 56197 95 + 1 UGUGUGUGCCUCGGGUU-UUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAGAAAUACAUUUUCUUGGGAGUUAGGUGAAAAG .(((((.(((((((((.-.......(((((....))))).))))))))))))))((((((.(((((((.....)))).)))..))...)))).... ( -35.10) >DroSim_CAF1 56623 95 + 1 UGUGUGUGCCUCGGGUU-UUGGGGUGUGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN ((.(((((((((((((.-..(((((((......))))))))))))))).))))).))....................................... ( -27.60) >DroEre_CAF1 57304 95 + 1 UGUGUGUGCCUCGGGUU-UUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAGAAAUACAUUUCCUAGGGCGUUAGGUGAGUAC ...(((.(((((((((.-.......(((((....))))).))))))))))))((((((((.((.((((....))))....)).))...)))))).. ( -33.50) >DroYak_CAF1 57470 96 + 1 UGUGUGUGCCCCGGGUUUUUGGGGUGGGUGGCAACAUCUUGCUCGGGGUCACACUCACACAGCAGAAAUAAAUUUUCUAGGGCGUUAGGUGAGUGG ...(((.(((((((((.........(((((....))))).))))))))))))((((((...(((((((.....)))))...)).....)))))).. ( -37.40) >DroAna_CAF1 53931 94 + 1 AGUGUGUG-CUCGGAUU-UUGGGGUAGGUGGAAACAUCUUGCUCGGGGUCAUACCCACAUACAGGAGCCGAAUGUUGCAAAGAGGUUUGUGGUGAC .(((((((-....((((-(((((..(((((....)))))..))))))))).....))))))).(..(((((((.((.....)).))))..)))..) ( -30.50) >consensus UGUGUGUGCCUCGGGUU_UUGGGGUGGGUGGAAACAUCUUGCUCGGGGUCACACUCACACACCAGAAAUACAUUUUCUAGGGCGUUAGGUGAGAAG .(((((.(((((((((.........(((((....))))).)))))))))))))).......................................... (-24.45 = -24.53 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:38:53 2006